Gene loci information

Transcript annotation

  • This transcript has been annotated as Fatty acid synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9446 g9446.t1 isoform g9446.t1 3084021 3091477
chr_1 g9446 g9446.t1 exon g9446.t1.exon1 3084021 3084670
chr_1 g9446 g9446.t1 cds g9446.t1.CDS1 3084021 3084670
chr_1 g9446 g9446.t1 exon g9446.t1.exon2 3084725 3085317
chr_1 g9446 g9446.t1 cds g9446.t1.CDS2 3084725 3085317
chr_1 g9446 g9446.t1 exon g9446.t1.exon3 3085402 3086626
chr_1 g9446 g9446.t1 cds g9446.t1.CDS3 3085402 3086626
chr_1 g9446 g9446.t1 exon g9446.t1.exon4 3086686 3089245
chr_1 g9446 g9446.t1 cds g9446.t1.CDS4 3086686 3089245
chr_1 g9446 g9446.t1 exon g9446.t1.exon5 3089303 3089652
chr_1 g9446 g9446.t1 cds g9446.t1.CDS5 3089303 3089652
chr_1 g9446 g9446.t1 exon g9446.t1.exon6 3089711 3090806
chr_1 g9446 g9446.t1 cds g9446.t1.CDS6 3089711 3090806
chr_1 g9446 g9446.t1 exon g9446.t1.exon7 3090866 3091477
chr_1 g9446 g9446.t1 cds g9446.t1.CDS7 3090866 3091477
chr_1 g9446 g9446.t1 TSS g9446.t1 NA NA
chr_1 g9446 g9446.t1 TTS g9446.t1 NA NA

Sequences

>g9446.t1 Gene=g9446 Length=7086
ATGGAAAGTTCAACTGTTAATCCAAGAGCTTTTGTCTCTAATTCTGATGAAGAAATTGTG
ATTTCTGGTGTATCAGGTCGATTTCCAAGAGCAAGGAATTTATATGAGCTTTCTCATAAT
CTTTACAATAAAATCAATATGGTAGATGATGAAGAAACTCGCTGGCGTCATGCAAACTCA
GAAATTCCTAAGCTTTCTGGAAAAATAAGTGGCTTAGAAAGATTTGATAACAATTTCTTC
GGAATTCCATCAAAACAAGCTCAATCAATGGATCCTCAATGTAGAATGATGCTTGAACAT
GCATATGAAGCTGTTTTAGATTCTGGTACAAATCCTATATCTATTCGTGGCACTAAAACA
GGTGTTTTCGTTGGTGTATGCTATAGTGAGTCTGAAAAAACTTGGTTTTATGAAAAAGCG
ACTCCGGATGGTAGTGGATTATCTGGCAATAGTCGAGCTTTGCTAGCCAATCGTATTTCT
TTCGTGCTTGGTTTAACTGGTCCGAGTTTGATTTGTGATACAGCATGCAGTTCTTCAATG
ACTGCTTTAGATATGGCTTATAATGCAATCAAATGTGGAGAATGTGATGCTGCTTTTGTT
GGTGGCACAAATTTAGTCTTACATCCTTTGATTAGTTTACAGTTTGCAAGATTAGGTGTG
TTGAGCATGTCTGGCTATTGTTCACCATTTGATGAAAAAGCTTCAGGTTACACAAGATCA
GAAACAACAGCAATAATTTTTCTTCAAAAAATGAAAAATGCTAGACGAAATTATGGTACT
TTAATGTATTCAAAAAGTAACTGTGATGGTTTTAAAGAAGAAGGCATTCATTATCCAAGT
GGAAATGTTCAACTAAAGCTTCTTGATGAGTTCTATAAAGATTTAAATATTTCACCATCA
TCTGTTGATTACATTGAAGCTCATTGCACTGGAACAGTAGCTGGTGATCCTGAAGAATGT
AAAGCAATATCTGAAATATTTTGTAAGGATGTCAAAAAACCGAAACTAATAGGATCTATT
AAATCTAATTTGGGTCATACAGAAGCATCATCAGGGCTGTGTTCTATAGTAAAAGTAATT
ACTATATTTGAAAATGGAAAAATACCTCCAAATATCAATTATAATTCTCCTCGGATTGAC
ATTCCATCATTACACAATGGACAACTAAAAGTCGTTGACGAAGTCACAGATTTTAATGGT
TCATTAATTTGTGTGAATTCATTTGGATTCGGAGGCGCAAATAGTCACGCACTCTTTAAA
AAGAATCCAAAGTCAAAAGTTAATTTTGGAATACCTAATGATGATATTCCAAGACTTGTT
ATTTGGTCTGGTAGAACTGAAGAGGCAGTAAATGAAATATTAGACAGTATAACAGAAAAA
CCACTCGATGCAGAATATATTGCACTCTTACAACACTCTCAAACAAAAACGGTTTCTGCA
AACTTTTACAAAGGTTATGGAATTTTTACAAACGAAGGTTTAAAGAATGCAAATTGTGTT
TTTCGTGATATTCAACACTTTAGCGGATTGAAGCGGCCAATGGTCTGGATTTATAGTGGA
ATGGGATCACAATGGTGTGGGATGGGTGCTGATTTAATGAAAATTCCTATCTTTGCTGAT
GCAATTGAAAAATGTCATGCTGTATTGGCAACTAAAGGCATGAATTTGAAAGAAATTATT
ACATCAAAAGATCCAAAAACGTTTGAAAATATTTTACATTCATTTGTTGGAATCGCTGCC
ATTCAAATTGGTCTGACTGATGTTTTAAAGACTTTGGGATTACAACCTGATTTTGTGATT
GGTCATTCAGTTGGTGAACTTGGCTGTGCTTATGCTGATAATTGCTTTACAGCGGAAGAA
ATGATTCTTTCTGCTTATTCACGTGGTATGGCAAGTCTTGAGACAAAAGTTGTTCGTGGA
TCAATGGCAGCTGTTGGACTCGGTTATAATCAATTGAAAAGTATTCTCCCTGATGATATT
GAAATTGCTTGTCACAATAGTTTTGAATCATGTACTATCTCAGGACCTTCTGAAAATGTT
AGCAAATTCGTTGATGAACTAATGACAAAAGGAATTTTTGCAAAAGAAGTTCAATGCTCT
AATATTGCATATCACAGTAAATATATAGCTCAAATGGGATCAAATCTACTCAAAAGACTC
AGTGAGGTCATTAAAGAACCTAAGAAACGGTCAAGCAAATGGATAAGTACAAGCTATCCA
AAATCAATGTGGCATTTAGAAAAGAGTCAATATTCATCTGCTGATTATCATACAAATAAT
TTATTAAGTTCTGTTTTGTTTGAAGAATCTTCAGCATTGTTGCCTAAAAATGCTGTTTGT
ATTGAAATTGCACCACATGGATTATTGCAAGCAATTGTGAAACGTTCAATGAACAATGCA
ATTCACATTCCTTTGACACATCGTGGACATAAAAATAACGATCAATTTTTGTTGAATGCT
CTTGGAAAAATCTTTTGCAATGGTTATGATCTCAATTTGCCATTGCTTTATCCTGCAGTC
AATTTTCCAGTGTCTAGAGGAACGCCAATGATTTCTCCAAGAATTAAATGGGATCATAGC
GATACTTGGTATGTTGCAAATGGTATAGAAGAGAAAACTTTAGATAAGTCAGCTGAAAGA
GTGGTCAAAATAAATCTAAATGATCCAGAATACGAATTTATAACTGGCCATATGATTGAT
GGTCGATGCTTGTTTCCTGCAACTGGTTACTTATATTTAGTTTGGGAAACTTTTTCAATG
ATTGTAGGTAGTGTTGCACAAAAAAGTAACGTTGAATTTGAAGATGTAAAATTTTTGAGA
GCAACAAATATTAACAAACAGTCTGAAGTAGTTTTCACTATTGTTATTCAACCTGGCACC
GGCAGATTTGAAATTTGTGAAGGTTCAACTGAACTTGTGACAGGAACAATTCGACTTCTC
GAAAAATCAAATCATCCAAAATTCAATGTCAAAGTTTGTCGCAAAAAGCTTTTATCGTCA
GCTGATTTCTATAAAGAACTTCGACTTCGTGGTTATCATTATAATGGTGAATTTAAATCA
GTTGAAGAGAGCAATTATGATGGAACATATGGAAGAATTCGATGGAGAGGCAATTGGGTA
GCTTTTATGGATTGCATGTTACAATTGCAAATAATTGGCAAAGACACTCGATCTCTAGTT
TTGCCAACATCGATTCAAAAATTGACAATCAATTTGACTGAGTGCGTTTTCAATAAAGTT
GAGGATGAAGATCAATTTTTTGATATTTATGCATCAAAAGAATTGAAGACAATTGTTGGA
GGAAGTGTTAAAATTGTAGGTCTTAAAGCGAGTGTTGTTCATCGTCGTCGTGCACCAGGT
GTGCCAGTTTTAGAATCTTATCAATTTATACCACACAATCCAACACCAATTTTAAGTAAA
TCTGATGCATCACGTGTGATTGTGCAATTAGCTTTAGAAAATCAACCAGATTCACTTGTG
AAAGTTGTTGAAGTCGAAGGTCATAGAAAAATGCTTTTGACAGAAATTCGCGATGGTTTA
TCAGATTTGCCTCTTGTCACACCTGATTTAACTTTAATTTCATCGAGAAATGTTGAACCT
GAAGATCAAATTGTTGTTGAAAATGTTAAATTAAGTTCACAAAAGAAATGCTTGATTGTG
ATTTTATCTGACATTACAAACAACTTTAATCTTATAGAAGAAGCTAAAGCTGCACTCATT
GATGGAGGTTTTTTAATTTGTCGAGAAAGTACAAATTTCAGACATCAAAATGAATTCAAA
AATCTTCTATCAATCGCGACAATTTGTACCGAAGATGAAAACCTTAATGTTTTTCATTAT
AAGAAACAACAGAATGTTAAGCCATTGACAGCAATTTATATTTCTGAGAAAGATAAAAGT
TTTGATTGGATTGAAGAGACAAAATCTTTGATGAAAAATGGACCACTTGTATTAGTTTCT
CAAAATGAACCATGTAATGGACTTTTAGGATTAGTCAATTGCATGAGAAAAGAACCTGAA
GGTCTCTCTATTAGATGCGTCATTATTGACGATCTTAAAGCACCAAAATTCAGTCTTGAT
GATCCATTTTATCAAAAACAATTGAACCTTGATCTCGGAATCAACATTTATCGAGAAGGA
CAGTGGGGAACTTATAGGCATTTACAAATTACCAAAAGTTATTCAGAACATATGACACTT
GATCACTGCTATGCAAACGCAACGGTAAAATCAGATTTGTCATCATTAAAATGGCTACAA
GGGCCATTAAATTTTTTGTCGAGTAAAAATTTAGTTCGAGTTCATTATAGTTCTTTGAAC
TTTAAAGATGTAATGATGGCGACTGGAAAAATTAACGCAGAAACTTTTGTTGAACATCGC
TTACAATGTGAATGTGTTCTTGGTTTCGAATATTCGGGAGTGACAAGGGAAGGAAGACGA
GTTATGGGATTAATTACATCTGGTGCATTAGCAACATTTGTTGATAGTGATCCTGCTTTA
ATGTGGGATGTGCCTAAAAATTGGACATTGGAAGAAGCAGCAACAGTTCCTTGTGTTTAT
GGAACAGTTTATTATGCATTCTTTGAAAAAGCAAAAATTCAAAAAGGAAAATCAATTTTG
ATTCACAGTGGAAGTGGAGGAATTGGCCTTGCTGCAATTCGAGTTGCACTTGCTTATGGC
TTAGAAGTTTTTACAACTGTTAGCACCAAAGAAAAGAAAGAATTTTTACTAAAGGAATTT
CCAAAGTTAAAAGAGTCAAATATTGGCAATTCACGTGATATTTCATTTGAAGAAATGATC
ATGGTACAAACTGACGGAAAAGGAGTTGATTATGTTTTGAATTCACTTGCTGAAGAGAAA
CTTTTGGCATCATTAAGGTGTTTAAAATTCGGAGGACACTTTATGGAAATAGGAAAATAT
GATATTGAAAAGGACACAAAAATTGGCATGGGTAACTTTTTGCAAGAAATTTCTGTACAT
TCAATTCATCTTGATAAAGTTTTATGTGCTCCATATGAAGATAGGATGAAATTGCGTAAC
TTATTTGAGAAAGGTCTCAAAGATAGTGTGGTTAAGCCTCTTAATGCAAATGTCTATAAA
GCTAGTAAAATTGAACAAGCATTCAGATTTATGTCTACTGGAAAGCATATTGGTAAAATT
TTACTTCAAATTCGAAGCACAGAAAATGAACCACAAACATTTCCAATTACTGTACATCCA
AGAGTTTATTGCAATCCAGAACATTCTTATATTATTTCTGGCGGTTTGGGTGGTTTTGGC
CTTGAGCTTGCTGATTGGTTAGTTTTGAGAGGATGCAGAAAACTTGTCTTGAGTTCAAGT
CGTGGAATAACAAAACAATATCAAGCTTATCGCATCAAAATTTGGGAATCATATGGTGTG
AATGTTGCTATCAATACATCTGATATAACAACACGTTCTGGATGTGAGCAATTGATCAAA
GAAGCGATGAAACTTGGACCAGTTGGTGGCATTTTCAATCTTGCTGTGCTTCTTCGTGAT
GCTATTTTTGAAAATCAAGACTCAAAGTCGTTTGTTGAGAGTATGGGACCAAAAGCAATT
GCAACAAAATATCTTGATGAACTTTCAAGAACTTTGTGTCCGGAGTTGCAATATTTTGTT
GTCTTCTCAAGTGTATCATGCGGACGTGGAAATGCTGGTCAAACGAATTATGGAATGGCT
AACTCTGTAATGGAAAGAATTATGGAACAAAGATATAAATTTGGATTGCCAGCAAAAGCT
ATTCAATGGGGTGCAGTTGGTGAGGTCGGTTTGGTTGCTGATATGCAAGAAGATCACAAG
ATTGATATGGAAATTGGTGGAACATTACAGCAAAGAATTTCATCTTGCTTAGAAGAACTC
GATCCATTGATTTTAGATTTGCAGTCAGTTGTTTCAAGCATGGTTGTGGCAGAAAAGAAA
TCGAGTGGAATTTCGAAAGGAAATATTGTTGAAACTGTCATGAACATAATGGGAATTCGT
GACATAAAATCAATCTCACTTGAAACAACTCTCAGTGAAATGGGTATGGACTCATTGATG
GCAGTTGAATTGAAACAAATTTTTGATCGAGAATTCGACATTAATTTTTCAATGCAAGAA
CTTCGAACATTGAACTTTTTGAAAATCATGGAAATTGCTCAATCAAGAGAATCAGATGCA
GGTGAAGATCTATCAAATGATCGTAAACCAAATGCAAACATTTTTGAATCTATTCTAAAG
CATTTGAGTAATGCATTAGGAAATGAAGAAAAGATTCAATATTATAATAATGAAAATATA
TCTGAAAATTCTGATAGTGTGGGTTTAATAATTCCTGGAATGGAGGGAACAGCATCTAAT
ATAATGCTTGATTTATTTAAAAATTTAAAATTTTCTTATTTCATTCTAAACTACTCTAGT
GTTGAAGCTAGCAAAGCAGAAACTATTGATGAATTAATGGAAATTATTGGTGTAGATACA
ATCAATGCTCTTCAAAAATACAACAAAATTTTTATAATTGCACATTCATTTGGAAATTTT
TTGGCAATAAAATTAGCTAAATTTTTCGAATCAGTTGGAAAAGAAATTTTCATTGCAAAC
GTCGATGGTTCGCCAAGTGTCTTAAGTAAAGCAGTTTCTCTTCATTTGGAAAATAAAAAT
GAAAAAGACTTCTACGATAGCGTGCTCTGTTATACAGCAACAATAATAACGCAAAATGTC
GATAAAGAAGAGCTTGATGCGATAACTAAAGAAGACACTTGGGAAAATAAACTTAATAAA
TTTTTTGAATGCGTGTCTTCACAAAAAACTTTCAGAAAAGAAACTTTGAGAGTTACAATG
AAATCAGTTGTTAACAGAATTTTAATTATGAAAAACGATGCTGAGAAATTGGAAGTGTTG
AAAAACACAAAATGTGCATTGATAAAACCATCAGAAGAAATAATTGCGAATCAAAAAGAT
AATTATGACTTAGACAAATATTTTAAACAAGAGGTAAAAATTATAAATTTGGAGGGTGAT
CATAACAGCATTTTGGAAAATGAAAAATTGCCTCAAATTTTGAATGATTTATACGAAGAA
TTTTGA

>g9446.t1 Gene=g9446 Length=2361
MESSTVNPRAFVSNSDEEIVISGVSGRFPRARNLYELSHNLYNKINMVDDEETRWRHANS
EIPKLSGKISGLERFDNNFFGIPSKQAQSMDPQCRMMLEHAYEAVLDSGTNPISIRGTKT
GVFVGVCYSESEKTWFYEKATPDGSGLSGNSRALLANRISFVLGLTGPSLICDTACSSSM
TALDMAYNAIKCGECDAAFVGGTNLVLHPLISLQFARLGVLSMSGYCSPFDEKASGYTRS
ETTAIIFLQKMKNARRNYGTLMYSKSNCDGFKEEGIHYPSGNVQLKLLDEFYKDLNISPS
SVDYIEAHCTGTVAGDPEECKAISEIFCKDVKKPKLIGSIKSNLGHTEASSGLCSIVKVI
TIFENGKIPPNINYNSPRIDIPSLHNGQLKVVDEVTDFNGSLICVNSFGFGGANSHALFK
KNPKSKVNFGIPNDDIPRLVIWSGRTEEAVNEILDSITEKPLDAEYIALLQHSQTKTVSA
NFYKGYGIFTNEGLKNANCVFRDIQHFSGLKRPMVWIYSGMGSQWCGMGADLMKIPIFAD
AIEKCHAVLATKGMNLKEIITSKDPKTFENILHSFVGIAAIQIGLTDVLKTLGLQPDFVI
GHSVGELGCAYADNCFTAEEMILSAYSRGMASLETKVVRGSMAAVGLGYNQLKSILPDDI
EIACHNSFESCTISGPSENVSKFVDELMTKGIFAKEVQCSNIAYHSKYIAQMGSNLLKRL
SEVIKEPKKRSSKWISTSYPKSMWHLEKSQYSSADYHTNNLLSSVLFEESSALLPKNAVC
IEIAPHGLLQAIVKRSMNNAIHIPLTHRGHKNNDQFLLNALGKIFCNGYDLNLPLLYPAV
NFPVSRGTPMISPRIKWDHSDTWYVANGIEEKTLDKSAERVVKINLNDPEYEFITGHMID
GRCLFPATGYLYLVWETFSMIVGSVAQKSNVEFEDVKFLRATNINKQSEVVFTIVIQPGT
GRFEICEGSTELVTGTIRLLEKSNHPKFNVKVCRKKLLSSADFYKELRLRGYHYNGEFKS
VEESNYDGTYGRIRWRGNWVAFMDCMLQLQIIGKDTRSLVLPTSIQKLTINLTECVFNKV
EDEDQFFDIYASKELKTIVGGSVKIVGLKASVVHRRRAPGVPVLESYQFIPHNPTPILSK
SDASRVIVQLALENQPDSLVKVVEVEGHRKMLLTEIRDGLSDLPLVTPDLTLISSRNVEP
EDQIVVENVKLSSQKKCLIVILSDITNNFNLIEEAKAALIDGGFLICRESTNFRHQNEFK
NLLSIATICTEDENLNVFHYKKQQNVKPLTAIYISEKDKSFDWIEETKSLMKNGPLVLVS
QNEPCNGLLGLVNCMRKEPEGLSIRCVIIDDLKAPKFSLDDPFYQKQLNLDLGINIYREG
QWGTYRHLQITKSYSEHMTLDHCYANATVKSDLSSLKWLQGPLNFLSSKNLVRVHYSSLN
FKDVMMATGKINAETFVEHRLQCECVLGFEYSGVTREGRRVMGLITSGALATFVDSDPAL
MWDVPKNWTLEEAATVPCVYGTVYYAFFEKAKIQKGKSILIHSGSGGIGLAAIRVALAYG
LEVFTTVSTKEKKEFLLKEFPKLKESNIGNSRDISFEEMIMVQTDGKGVDYVLNSLAEEK
LLASLRCLKFGGHFMEIGKYDIEKDTKIGMGNFLQEISVHSIHLDKVLCAPYEDRMKLRN
LFEKGLKDSVVKPLNANVYKASKIEQAFRFMSTGKHIGKILLQIRSTENEPQTFPITVHP
RVYCNPEHSYIISGGLGGFGLELADWLVLRGCRKLVLSSSRGITKQYQAYRIKIWESYGV
NVAINTSDITTRSGCEQLIKEAMKLGPVGGIFNLAVLLRDAIFENQDSKSFVESMGPKAI
ATKYLDELSRTLCPELQYFVVFSSVSCGRGNAGQTNYGMANSVMERIMEQRYKFGLPAKA
IQWGAVGEVGLVADMQEDHKIDMEIGGTLQQRISSCLEELDPLILDLQSVVSSMVVAEKK
SSGISKGNIVETVMNIMGIRDIKSISLETTLSEMGMDSLMAVELKQIFDREFDINFSMQE
LRTLNFLKIMEIAQSRESDAGEDLSNDRKPNANIFESILKHLSNALGNEEKIQYYNNENI
SENSDSVGLIIPGMEGTASNIMLDLFKNLKFSYFILNYSSVEASKAETIDELMEIIGVDT
INALQKYNKIFIIAHSFGNFLAIKLAKFFESVGKEIFIANVDGSPSVLSKAVSLHLENKN
EKDFYDSVLCYTATIITQNVDKEELDAITKEDTWENKLNKFFECVSSQKTFRKETLRVTM
KSVVNRILIMKNDAEKLEVLKNTKCALIKPSEEIIANQKDNYDLDKYFKQEVKIINLEGD
HNSILENEKLPQILNDLYEEF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
35 g9446.t1 CDD cd00833 PKS 17 418 0.0000000
36 g9446.t1 CDD cd05195 enoyl_red 1432 1722 0.0000000
34 g9446.t1 CDD cd08954 KR_1_FAS_SDR_x 1740 1977 0.0000000
25 g9446.t1 Gene3D G3DSA:3.40.47.10 - 14 436 0.0000000
30 g9446.t1 Gene3D G3DSA:3.30.70.3290 - 437 865 0.0000000
28 g9446.t1 Gene3D G3DSA:3.40.366.10 - 510 828 0.0000000
31 g9446.t1 Gene3D G3DSA:3.10.129.110 - 877 1118 0.0000000
24 g9446.t1 Gene3D G3DSA:3.40.50.720 - 1298 1976 0.0000000
27 g9446.t1 Gene3D G3DSA:3.90.180.10 - 1392 1742 0.0000000
26 g9446.t1 Gene3D G3DSA:1.10.1200.10 - 1983 2066 0.0000000
29 g9446.t1 Gene3D G3DSA:3.40.50.1820 - 2110 2350 0.0000000
32 g9446.t1 Gene3D G3DSA:1.10.1470.20 Fatty acid synthase; domain 2 2208 2293 0.0000000
9 g9446.t1 PANTHER PTHR43775 FATTY ACID SYNTHASE 8 2358 0.0000000
10 g9446.t1 PANTHER PTHR43775:SF23 FATTY ACID SYNTHASE 3 8 2358 0.0000000
4 g9446.t1 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 17 253 0.0000000
1 g9446.t1 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 258 374 0.0000000
8 g9446.t1 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 377 488 0.0000000
7 g9446.t1 Pfam PF00698 Acyl transferase domain 515 828 0.0000000
3 g9446.t1 Pfam PF14765 Polyketide synthase dehydratase 879 1071 0.0000000
5 g9446.t1 Pfam PF00107 Zinc-binding dehydrogenase 1547 1666 0.0000000
2 g9446.t1 Pfam PF08659 KR domain 1749 1927 0.0000000
6 g9446.t1 Pfam PF00550 Phosphopantetheine attachment site 1990 2041 0.0000003
33 g9446.t1 ProSiteProfiles PS50075 Carrier protein (CP) domain profile. 1980 2060 10.4060000
22 g9446.t1 SMART SM00825 Beta-ketoacyl synthase 19 424 0.0000000
20 g9446.t1 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 517 810 0.0000000
19 g9446.t1 SMART SM00829 PKS_ER_names_mod 1411 1722 0.0000000
23 g9446.t1 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1748 1929 0.0000000
21 g9446.t1 SMART SM00823 Phosphopantetheine attachment site 1986 2044 0.0014000
13 g9446.t1 SUPERFAMILY SSF53901 Thiolase-like 14 420 0.0000000
12 g9446.t1 SUPERFAMILY SSF52151 FabD/lysophospholipase-like 514 800 0.0000000
18 g9446.t1 SUPERFAMILY SSF55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase 639 698 0.0000004
16 g9446.t1 SUPERFAMILY SSF50129 GroES-like 1430 1542 0.0000000
15 g9446.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1511 1665 0.0000000
14 g9446.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1749 1940 0.0000000
17 g9446.t1 SUPERFAMILY SSF47336 ACP-like 1989 2042 0.0000000
11 g9446.t1 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 2109 2355 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031177 phosphopantetheine binding MF
GO:0016746 acyltransferase activity MF
GO:0016740 transferase activity MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF
GO:0004312 fatty acid synthase activity MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed