General information for g9468.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aminopeptidase N.
Parent gene
- The parent gene g9468 is located on chr_1: 3430209..3431117 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9468 | g9468.t1 | isoform | g9468.t1 | 3430209 | 3431117 |
| chr_1 | g9468 | g9468.t1 | exon | g9468.t1.exon1 | 3430209 | 3430865 |
| chr_1 | g9468 | g9468.t1 | cds | g9468.t1.CDS1 | 3430209 | 3430865 |
| chr_1 | g9468 | g9468.t1 | exon | g9468.t1.exon2 | 3430950 | 3431117 |
| chr_1 | g9468 | g9468.t1 | cds | g9468.t1.CDS2 | 3430950 | 3431117 |
| chr_1 | g9468 | g9468.t1 | TSS | g9468.t1 | 3432134 | 3432134 |
| chr_1 | g9468 | g9468.t1 | TTS | g9468.t1 | NA | NA |
Sequences
>g9468.t1 Gene=g9468 Length=825
ATGCTACCAAAACTTGATCATGCAGCAATCACAGAATTTCCAAGTGGTGCAATGGAAAAT
TTTGGATTTATAACTTATCGTGAAGTAGGCTTGCTGCTTTATACAAATTATACTGAAGCA
CAAATTTACTCTAATAAAAAATACATCGCTAGATTATTAGCCCATGAGTTTTCTCCTCAA
TGGTGGACTTATCTCTTTCTTAATGAAGGATTTGCAACATTCTTTCAATATTATGTTACT
AATCATCTTTTCCCTGAACTTGGTTTTGATGAAGACTATAGAACTGCTGCTATTCAAGCT
TCTTTAGTCAACGATGTAATCACAAATCCAGCTTGTGTTCCAATGGAATATTATGTTGAA
GAACAAACTGCCATTCGTGGTCGATTCAATTATGTTTCATATCAAAAAGCAGGCAGCATA
ATTGGAATGTTTTTGAAGCAATTGGAGAGAAATTTTCCTAAAAGGTCTTACAAAATATTG
ACAGAAAATTATTATCAAGCTGCATCACCAGCTGAACTTTATAAAGCAATTCAAGAAGCT
TATGATGAAGAAAATCCTAATGGTAAATTGGATATTCCAAAATTAATGAGTTCATGGTCA
ACTCAAGCAGGTTATCCAATTGTATCGATTGAAAAGTCTGGAAGCAAACTCAAATTGAGT
CAGACAAGATATCCAAGTGGAAATGGTGAAATTTATTCAGTGCCATTGACATTTTCAACT
GCATCAAAAATTGATTTTGCTACCAAGACTGCAGGACATTGGTTGACAACAAAAGCGAAG
AAGTTAATTTCGAAAATCTCAATTTCAATGAAGGCGATTGGATAA
>g9468.t1 Gene=g9468 Length=274
MLPKLDHAAITEFPSGAMENFGFITYREVGLLLYTNYTEAQIYSNKKYIARLLAHEFSPQ
WWTYLFLNEGFATFFQYYVTNHLFPELGFDEDYRTAAIQASLVNDVITNPACVPMEYYVE
EQTAIRGRFNYVSYQKAGSIIGMFLKQLERNFPKRSYKILTENYYQAASPAELYKAIQEA
YDEENPNGKLDIPKLMSSWSTQAGYPIVSIEKSGSKLKLSQTRYPSGNGEIYSVPLTFST
ASKIDFATKTAGHWLTTKAKKLISKISISMKAIG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9468.t1 | Gene3D | G3DSA:1.10.390.60 | - | 1 | 204 | 0.0e+00 |
| 5 | g9468.t1 | Gene3D | G3DSA:2.60.40.1910 | - | 205 | 272 | 1.3e-05 |
| 2 | g9468.t1 | PANTHER | PTHR11533:SF283 | AMINOPEPTIDASE | 2 | 265 | 0.0e+00 |
| 3 | g9468.t1 | PANTHER | PTHR11533 | PROTEASE M1 ZINC METALLOPROTEASE | 2 | 265 | 0.0e+00 |
| 1 | g9468.t1 | Pfam | PF01433 | Peptidase family M1 domain | 2 | 199 | 0.0e+00 |
| 4 | g9468.t1 | SUPERFAMILY | SSF55486 | Metalloproteases (zincins), catalytic domain | 2 | 210 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008237 | metallopeptidase activity | MF |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed