General information for g9469.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aminopeptidase N.
Parent gene
- The parent gene g9469 is located on chr_1: 3431166..3432096 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9469 | g9469.t1 | isoform | g9469.t1 | 3431166 | 3432096 |
| chr_1 | g9469 | g9469.t1 | exon | g9469.t1.exon1 | 3431166 | 3431806 |
| chr_1 | g9469 | g9469.t1 | cds | g9469.t1.CDS1 | 3431166 | 3431806 |
| chr_1 | g9469 | g9469.t1 | exon | g9469.t1.exon2 | 3431961 | 3432096 |
| chr_1 | g9469 | g9469.t1 | cds | g9469.t1.CDS2 | 3431961 | 3432096 |
| chr_1 | g9469 | g9469.t1 | TSS | g9469.t1 | 3432134 | 3432134 |
| chr_1 | g9469 | g9469.t1 | TTS | g9469.t1 | NA | NA |
Sequences
>g9469.t1 Gene=g9469 Length=777
ATGAAAAGTTTCATTATTGTGATTGCACTTATAAGTGTAATTTTAGCTAGTCCAATTGAG
AACACTCAAAAGTTATTCAAATATCAACAGTCAGATGAAATTCCAGTTGAATTTAAAGAG
TTTCTATTTAAAAATGGTCGAGTAAAAATTCACATTCGTGCTATTGAAGAAACTGATTAT
GTGACATTAAATTATCGCGAGACTCAAATTGATTTGATTGATTTATTGAATGTCGAAACG
AATCAAGTGATTGAAACAAATTTGACTTATAACTTTCTTGAGCCTCTCGATCGTGAATTT
ATGAGAATTTCACTTCCATCAACTGTGACTAAAGACTCAGAATTTATTCTTGATATAAAA
TATCATGGTGTGCTGCATGTGGCTGATGATAATGGTTTTTATAGAGCCAGTTACAGAGAT
CAAAATACAAATGAGTTAGTCTGGTATGCTACAACCAAATTTGAGCCACATCATGCTCGT
CATCTCATGCCATGCTATGATGAACCACAAATTCGTGCACCAATTGGATTACAAGTACAA
CATGATAAGAATTATCGAACATTTTCAAATATGCCAATCATAAATCGTACTGAAATTGAA
GGTACTGATTATGTGTTATCAATTTTTATTGACACTCCACCAATGCAGACTTATTTACTT
GCATTTCTTGTCTCTGATTTTCAATACAAATCAAATGAAGCTCAAGACATTGAACAGAGA
ATTTTCGCCAAACCTCAATCGATTCAAGACGGTTCAGCTGATTATGCAGCTTCGTAA
>g9469.t1 Gene=g9469 Length=258
MKSFIIVIALISVILASPIENTQKLFKYQQSDEIPVEFKEFLFKNGRVKIHIRAIEETDY
VTLNYRETQIDLIDLLNVETNQVIETNLTYNFLEPLDREFMRISLPSTVTKDSEFILDIK
YHGVLHVADDNGFYRASYRDQNTNELVWYATTKFEPHHARHLMPCYDEPQIRAPIGLQVQ
HDKNYRTFSNMPIINRTEIEGTDYVLSIFIDTPPMQTYLLAFLVSDFQYKSNEAQDIEQR
IFAKPQSIQDGSADYAAS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9469.t1 | Gene3D | G3DSA:2.60.40.1730 | tricorn interacting facor f3 domain | 25 | 227 | 6.2E-47 |
| 2 | g9469.t1 | PANTHER | PTHR11533:SF283 | AMINOPEPTIDASE | 45 | 256 | 2.4E-49 |
| 3 | g9469.t1 | PANTHER | PTHR11533 | PROTEASE M1 ZINC METALLOPROTEASE | 45 | 256 | 2.4E-49 |
| 4 | g9469.t1 | PRINTS | PR00756 | Membrane alanyl dipeptidase (M1) family signature | 160 | 175 | 7.6E-8 |
| 5 | g9469.t1 | PRINTS | PR00756 | Membrane alanyl dipeptidase (M1) family signature | 209 | 224 | 7.6E-8 |
| 1 | g9469.t1 | Pfam | PF17900 | Peptidase M1 N-terminal domain | 36 | 219 | 8.0E-37 |
| 10 | g9469.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 16 | - |
| 11 | g9469.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 12 | g9469.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 11 | - |
| 13 | g9469.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 16 | - |
| 9 | g9469.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 17 | 258 | - |
| 6 | g9469.t1 | SUPERFAMILY | SSF63737 | Leukotriene A4 hydrolase N-terminal domain | 45 | 226 | 4.84E-36 |
| 7 | g9469.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed