General information for g9510.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as DET1-like protein.
Parent gene
- The parent gene g9510 is located on chr_1: 3827736..3829433 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9510 | g9510.t2 | TTS | g9510.t2 | 3827711 | 3827711 |
| chr_1 | g9510 | g9510.t2 | isoform | g9510.t2 | 3827736 | 3828768 |
| chr_1 | g9510 | g9510.t2 | exon | g9510.t2.exon1 | 3827736 | 3828768 |
| chr_1 | g9510 | g9510.t2 | cds | g9510.t2.CDS1 | 3827736 | 3828623 |
| chr_1 | g9510 | g9510.t2 | TSS | g9510.t2 | 3829460 | 3829460 |
Sequences
>g9510.t2 Gene=g9510 Length=1033
TCGTATTACAGATTCAATTGAATTTAAAATAGACAAAATTATTTTGTCACATAATCAAGG
ACTTTATTTATACAATGATACATTAGCAGTTTTATCAATTCAGCATCAAACGATTCATAT
TTATCACATTCTTGATGGTACATTCATGCATGTGAGATCAATTGGTAGATTTTGCTGCAA
TGAGGAACAATTTCTTTTCACAACTACTTCTTCTGCAACCAATAATCGACCATTTAGAGA
ACCAACAATTAACAGTTTAAAACATAGAATTTTAGTTTATTTATTCAATCAAGCAAAAGC
AAAAAGTGAAGCAGGTGATCGAGTGGCACTAAGAAAATTCTATCAAAATTTTGATCAATA
TCTTGGTTTACGAATGTGGAAAATTCAGCTATTGGATGAAGACCATTTACTAATAAAATA
TTCAAGTGAAGAAGTTGTAACATTAAAAGTTCATGAACCAAACAGTCATGCTTCATTTTT
TGTGATTTATAATATATGGGAAAAGAAAATTTTAGCAGTCTATAGTAATGTGAGTGAAGA
GCTGCTATATCTTTTCGAAAATTTCTGTGATTCTTTTCGCAATGCGAAACTTTCTTCACA
CTCTCAATGGACATGCTCACCTTCAAATAACATCTATGCAAATCTTCTTCATCAACGATT
TAAGCAGACAATTATCTCAGCGAAAGGTGGAGGGTTGTTTGAAGCAACAAAAAGAATCAA
CGCTCAATTGCCAATTTCCGCTCAAAGCTACTCATCAAGTCCATATTTAGATCTATCGCT
ATTTCGATATGATGATAAATTTGTTTCAATTATGGAACGGCCGAAAGCTGCAAGTGAATT
TTCAATACGCTTTTTTGCGAGAGATTCTGATCTTCTGCGGTTTAGAATTTTTGCTTTACA
AAAAAGCGGTTTACCAGGAAGACGACTTGTTGCATTTTGTTTTCATCCATTTCAACCTTT
CGCAATTAGTGTTCAACGAATCAATACAGACTATATTGTAAACTTTCATTTATGGAATTC
AAAAATAAAATAA
>g9510.t2 Gene=g9510 Length=295
MHVRSIGRFCCNEEQFLFTTTSSATNNRPFREPTINSLKHRILVYLFNQAKAKSEAGDRV
ALRKFYQNFDQYLGLRMWKIQLLDEDHLLIKYSSEEVVTLKVHEPNSHASFFVIYNIWEK
KILAVYSNVSEELLYLFENFCDSFRNAKLSSHSQWTCSPSNNIYANLLHQRFKQTIISAK
GGGLFEATKRINAQLPISAQSYSSSPYLDLSLFRYDDKFVSIMERPKAASEFSIRFFARD
SDLLRFRIFALQKSGLPGRRLVAFCFHPFQPFAISVQRINTDYIVNFHLWNSKIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9510.t2 | PANTHER | PTHR13374 | DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG | 2 | 291 | 0 |
| 1 | g9510.t2 | Pfam | PF09737 | De-etiolated protein 1 Det1 | 2 | 290 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
