Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative DET1-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9510 g9510.t3 TTS g9510.t3 3827711 3827711
chr_1 g9510 g9510.t3 isoform g9510.t3 3827736 3829433
chr_1 g9510 g9510.t3 exon g9510.t3.exon1 3827736 3828769
chr_1 g9510 g9510.t3 cds g9510.t3.CDS1 3828748 3828769
chr_1 g9510 g9510.t3 exon g9510.t3.exon2 3828826 3829433
chr_1 g9510 g9510.t3 cds g9510.t3.CDS2 3828826 3829433
chr_1 g9510 g9510.t3 TSS g9510.t3 3829460 3829460

Sequences

>g9510.t3 Gene=g9510 Length=1642
ATGGACGATGGAGTTATTTGTCGTGAAAGAATAAAACCAAGAAAGCTTGCAAAGTCACAA
AATATTGTTGACCGCTTAAGAAATCGAGAGCATTTTGGAAATAGGACAGAAATTTCATAC
TTGGAATTTTATCAATGTATTTTTCCTAATTGCACTGTTACTAATATTGAAAAGCCAGCT
TGCTATCTCAGAAAATTCAGTCCTTGTGGCCGCTATTTAATTGCGTTTAGTAGTGATCAA
GCAAGTTTGGAAATTTATGATTTTAAAGGATGTTCAGCTGCTGGTGATTTGCTAAAAGAC
TGGACAGAAGAAGTCGTTCCAAACGTTAATAAAGACAAAGCATATGAAATTCGTAGTAAA
ATTTTTAACAAACTCTTCAGACTTAAGCATGTAGTAAATATGGATGGCAGTGAGAAGCAA
TTGAATCGCGAATGCAGCTTATTTTGTAATGATGGAAAGCATGTCATTGTTGGAGCTGCA
ATTTTAATTTCTGATGACTTGAGACCACATTTTTATGAATTATATACCAACAATGAATTC
ATATCAACTACAGCAAATTGCCCATTAGAAGACTACACACTTTATATTATAGATCTTATT
GAAGGCAAGTCGTATTACAGATTCAATTGAATTTAAAATAGACAAAATTATTTTGTCACA
TAATCAAGGACTTTATTTATACAATGATACATTAGCAGTTTTATCAATTCAGCATCAAAC
GATTCATATTTATCACATTCTTGATGGTACATTCATGCATGTGAGATCAATTGGTAGATT
TTGCTGCAATGAGGAACAATTTCTTTTCACAACTACTTCTTCTGCAACCAATAATCGACC
ATTTAGAGAACCAACAATTAACAGTTTAAAACATAGAATTTTAGTTTATTTATTCAATCA
AGCAAAAGCAAAAAGTGAAGCAGGTGATCGAGTGGCACTAAGAAAATTCTATCAAAATTT
TGATCAATATCTTGGTTTACGAATGTGGAAAATTCAGCTATTGGATGAAGACCATTTACT
AATAAAATATTCAAGTGAAGAAGTTGTAACATTAAAAGTTCATGAACCAAACAGTCATGC
TTCATTTTTTGTGATTTATAATATATGGGAAAAGAAAATTTTAGCAGTCTATAGTAATGT
GAGTGAAGAGCTGCTATATCTTTTCGAAAATTTCTGTGATTCTTTTCGCAATGCGAAACT
TTCTTCACACTCTCAATGGACATGCTCACCTTCAAATAACATCTATGCAAATCTTCTTCA
TCAACGATTTAAGCAGACAATTATCTCAGCGAAAGGTGGAGGGTTGTTTGAAGCAACAAA
AAGAATCAACGCTCAATTGCCAATTTCCGCTCAAAGCTACTCATCAAGTCCATATTTAGA
TCTATCGCTATTTCGATATGATGATAAATTTGTTTCAATTATGGAACGGCCGAAAGCTGC
AAGTGAATTTTCAATACGCTTTTTTGCGAGAGATTCTGATCTTCTGCGGTTTAGAATTTT
TGCTTTACAAAAAAGCGGTTTACCAGGAAGACGACTTGTTGCATTTTGTTTTCATCCATT
TCAACCTTTCGCAATTAGTGTTCAACGAATCAATACAGACTATATTGTAAACTTTCATTT
ATGGAATTCAAAAATAAAATAA

>g9510.t3 Gene=g9510 Length=209
MDDGVICRERIKPRKLAKSQNIVDRLRNREHFGNRTEISYLEFYQCIFPNCTVTNIEKPA
CYLRKFSPCGRYLIAFSSDQASLEIYDFKGCSAAGDLLKDWTEEVVPNVNKDKAYEIRSK
IFNKLFRLKHVVNMDGSEKQLNRECSLFCNDGKHVIVGAAILISDDLRPHFYELYTNNEF
ISTTANCPLEDYTLYIIDLIEGKSYYRFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9510.t3 PANTHER PTHR13374 DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG 17 203 0
1 g9510.t3 Pfam PF09737 De-etiolated protein 1 Det1 143 203 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed