General information for g9510.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as DET1-like protein.
Parent gene
- The parent gene g9510 is located on chr_1: 3827736..3829433 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9510 | g9510.t4 | TTS | g9510.t4 | 3827711 | 3827711 |
| chr_1 | g9510 | g9510.t4 | isoform | g9510.t4 | 3827736 | 3829433 |
| chr_1 | g9510 | g9510.t4 | exon | g9510.t4.exon1 | 3827736 | 3828769 |
| chr_1 | g9510 | g9510.t4 | cds | g9510.t4.CDS1 | 3827736 | 3828769 |
| chr_1 | g9510 | g9510.t4 | exon | g9510.t4.exon2 | 3828833 | 3829433 |
| chr_1 | g9510 | g9510.t4 | cds | g9510.t4.CDS2 | 3828833 | 3829433 |
| chr_1 | g9510 | g9510.t4 | TSS | g9510.t4 | 3829460 | 3829460 |
Sequences
>g9510.t4 Gene=g9510 Length=1635
ATGGACGATGGAGTTATTTGTCGTGAAAGAATAAAACCAAGAAAGCTTGCAAAGTCACAA
AATATTGTTGACCGCTTAAGAAATCGAGAGCATTTTGGAAATAGGACAGAAATTTCATAC
TTGGAATTTTATCAATGTATTTTTCCTAATTGCACTGTTACTAATATTGAAAAGCCAGCT
TGCTATCTCAGAAAATTCAGTCCTTGTGGCCGCTATTTAATTGCGTTTAGTAGTGATCAA
GCAAGTTTGGAAATTTATGATTTTAAAGGATGTTCAGCTGCTGGTGATTTGCTAAAAGAC
TGGACAGAAGAAGTCGTTCCAAACGTTAATAAAGACAAAGCATATGAAATTCGTAGTAAA
ATTTTTAACAAACTCTTCAGACTTAAGCATGTAGTAAATATGGATGGCAGTGAGAAGCAA
TTGAATCGCGAATGCAGCTTATTTTGTAATGATGGAAAGCATGTCATTGTTGGAGCTGCA
ATTTTAATTTCTGATGACTTGAGACCACATTTTTATGAATTATATACCAACAATGAATTC
ATATCAACTACAGCAAATTGCCCATTAGAAGACTACACACTTTATATTATAGATCTTATT
GGTCGTATTACAGATTCAATTGAATTTAAAATAGACAAAATTATTTTGTCACATAATCAA
GGACTTTATTTATACAATGATACATTAGCAGTTTTATCAATTCAGCATCAAACGATTCAT
ATTTATCACATTCTTGATGGTACATTCATGCATGTGAGATCAATTGGTAGATTTTGCTGC
AATGAGGAACAATTTCTTTTCACAACTACTTCTTCTGCAACCAATAATCGACCATTTAGA
GAACCAACAATTAACAGTTTAAAACATAGAATTTTAGTTTATTTATTCAATCAAGCAAAA
GCAAAAAGTGAAGCAGGTGATCGAGTGGCACTAAGAAAATTCTATCAAAATTTTGATCAA
TATCTTGGTTTACGAATGTGGAAAATTCAGCTATTGGATGAAGACCATTTACTAATAAAA
TATTCAAGTGAAGAAGTTGTAACATTAAAAGTTCATGAACCAAACAGTCATGCTTCATTT
TTTGTGATTTATAATATATGGGAAAAGAAAATTTTAGCAGTCTATAGTAATGTGAGTGAA
GAGCTGCTATATCTTTTCGAAAATTTCTGTGATTCTTTTCGCAATGCGAAACTTTCTTCA
CACTCTCAATGGACATGCTCACCTTCAAATAACATCTATGCAAATCTTCTTCATCAACGA
TTTAAGCAGACAATTATCTCAGCGAAAGGTGGAGGGTTGTTTGAAGCAACAAAAAGAATC
AACGCTCAATTGCCAATTTCCGCTCAAAGCTACTCATCAAGTCCATATTTAGATCTATCG
CTATTTCGATATGATGATAAATTTGTTTCAATTATGGAACGGCCGAAAGCTGCAAGTGAA
TTTTCAATACGCTTTTTTGCGAGAGATTCTGATCTTCTGCGGTTTAGAATTTTTGCTTTA
CAAAAAAGCGGTTTACCAGGAAGACGACTTGTTGCATTTTGTTTTCATCCATTTCAACCT
TTCGCAATTAGTGTTCAACGAATCAATACAGACTATATTGTAAACTTTCATTTATGGAAT
TCAAAAATAAAATAA
>g9510.t4 Gene=g9510 Length=544
MDDGVICRERIKPRKLAKSQNIVDRLRNREHFGNRTEISYLEFYQCIFPNCTVTNIEKPA
CYLRKFSPCGRYLIAFSSDQASLEIYDFKGCSAAGDLLKDWTEEVVPNVNKDKAYEIRSK
IFNKLFRLKHVVNMDGSEKQLNRECSLFCNDGKHVIVGAAILISDDLRPHFYELYTNNEF
ISTTANCPLEDYTLYIIDLIGRITDSIEFKIDKIILSHNQGLYLYNDTLAVLSIQHQTIH
IYHILDGTFMHVRSIGRFCCNEEQFLFTTTSSATNNRPFREPTINSLKHRILVYLFNQAK
AKSEAGDRVALRKFYQNFDQYLGLRMWKIQLLDEDHLLIKYSSEEVVTLKVHEPNSHASF
FVIYNIWEKKILAVYSNVSEELLYLFENFCDSFRNAKLSSHSQWTCSPSNNIYANLLHQR
FKQTIISAKGGGLFEATKRINAQLPISAQSYSSSPYLDLSLFRYDDKFVSIMERPKAASE
FSIRFFARDSDLLRFRIFALQKSGLPGRRLVAFCFHPFQPFAISVQRINTDYIVNFHLWN
SKIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9510.t4 | PANTHER | PTHR13374 | DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG | 17 | 540 | 0 |
| 1 | g9510.t4 | Pfam | PF09737 | De-etiolated protein 1 Det1 | 143 | 539 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10571 (de-etiolated-1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
