General information for g9524.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 40S ribosomal protein S2.
Parent gene
- The parent gene g9524 is located on chr_1: 3889012..3890129 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9524 | g9524.t6 | isoform | g9524.t6 | 3888292 | 3888652 |
| chr_1 | g9524 | g9524.t6 | TTS | g9524.t6 | 3888292 | 3888292 |
| chr_1 | g9524 | g9524.t6 | exon | g9524.t6.exon1 | 3888292 | 3888652 |
| chr_1 | g9524 | g9524.t6 | cds | g9524.t6.CDS1 | 3888353 | 3888577 |
| chr_1 | g9524 | g9524.t6 | TSS | g9524.t6 | NA | NA |
Sequences
>g9524.t6 Gene=g9524 Length=361
GTTCAAGTCAAATTGATTCCAGCACCAAGAGGAACAGGCATTGTTAGTGCTCCAGTTCCA
AAGAAATTACTTCAAATGGCTGGTATTGAAGATTGCTACACTCAATGTCGCGGTTCAACT
ACAACTTTGGGTAACTTCGCAAAAGCCACTTACTCAGCTATCATGAAGACTTATGCTTTC
TTGACACCTGATTTGTGGAAAGAAATTCCTTTAAGCAAATCACCATACGAAGTTTATGCT
GACTTCCTTGCGAAACCAGCTGGTAAAACTGGAGGCATTCGCAACATTGATTTGTCTTAA
AATGTTAAAAATGCCCTTTGAAAAACATTCACAAATAAAATGACATCCATTTTTAAAGTG
A
>g9524.t6 Gene=g9524 Length=74
MAGIEDCYTQCRGSTTTLGNFAKATYSAIMKTYAFLTPDLWKEIPLSKSPYEVYADFLAK
PAGKTGGIRNIDLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9524.t6 | Gene3D | G3DSA:3.30.230.10 | - | 1 | 43 | 0 |
| 2 | g9524.t6 | PANTHER | PTHR13718 | RIBOSOMAL S SUBUNIT | 1 | 61 | 0 |
| 3 | g9524.t6 | PANTHER | PTHR13718:SF98 | - | 1 | 61 | 0 |
| 1 | g9524.t6 | Pfam | PF03719 | Ribosomal protein S5, C-terminal domain | 1 | 41 | 0 |
| 4 | g9524.t6 | SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 1 | 43 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005840 | ribosome | CC |
| GO:0006412 | translation | BP |
| GO:0003735 | structural constituent of ribosome | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
