Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t11 isoform g9526.t11 3895835 3904146
chr_1 g9526 g9526.t11 exon g9526.t11.exon1 3895835 3896332
chr_1 g9526 g9526.t11 cds g9526.t11.CDS1 3896329 3896332
chr_1 g9526 g9526.t11 exon g9526.t11.exon2 3896400 3896555
chr_1 g9526 g9526.t11 cds g9526.t11.CDS2 3896400 3896555
chr_1 g9526 g9526.t11 exon g9526.t11.exon3 3896620 3897109
chr_1 g9526 g9526.t11 cds g9526.t11.CDS3 3896620 3897109
chr_1 g9526 g9526.t11 exon g9526.t11.exon4 3904083 3904146
chr_1 g9526 g9526.t11 cds g9526.t11.CDS4 3904083 3904146
chr_1 g9526 g9526.t11 TSS g9526.t11 3904225 3904225
chr_1 g9526 g9526.t11 TTS g9526.t11 NA NA

Sequences

>g9526.t11 Gene=g9526 Length=1208
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAG
GAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGG
CGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAA
ATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATC
TTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTT
TACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGAC
CGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATG
ACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTT
TATTATGAGATTTTGAACGCGCCAGACAGAGCTTGCAGATTAGCGAAAGCCGCATTTGAT
GATGCTATTGCAGAATTGGATACACTCAGCGAAGAAAGCTATAAAGATTCCACACTAATT
ATGCAATTATTAAGAGACAACTTAACTCTTTGGACATCAGATATGCAGGGGTGAAGGTGA
ACAGAAAGAGCCCATCCAAGATGTTGAAGATCAGGATGTGTCGTAATTGAGTCGCCATCA
ATAATTAAAATTCAAATACCACACTCCACCAACTCTTATATTTTCTATCAAAAAAATCTT
AAATGTTCCCTCCCCACATCATTGTATAATTTAAAATGAATCCAACAACAAAAATCTTGT
TTGTAATTTTTTTTTTCTTTAAGATTCTCTTTATGCAGGCAACAGTTAAAAATCATTGTT
TAATTTTTAATTTTCTCAAGACACACATTTAAATTTGTGATTATTAGGAATGTTATAATC
ACTATGAAAATAACAAAGATATAAATCTTTTTTTTTGTTCGATCATTATTTTATTTTATT
ATTCTTGTTCTGTTTTTATACAGTCATCTTTCTCTTTCATTTATGCATCATCATTTCTTT
CACACTGATACAAAATAAAACAAGTCGTCTCTTTTTGTAAAGAATGAAACAATTTTCCAT
AAAATTAA

>g9526.t11 Gene=g9526 Length=237
MSERENNVYKAKLAEQAERYDEMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASW
RIISSIEQKEENKGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVF
YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVF
YYEILNAPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g9526.t11 CDD cd10020 14-3-3_epsilon 4 233 2.00645E-172
13 g9526.t11 Coils Coil Coil 10 30 -
12 g9526.t11 Coils Coil Coil 72 95 -
11 g9526.t11 Gene3D G3DSA:1.20.190.20 - 1 237 5.2E-127
2 g9526.t11 PANTHER PTHR18860 14-3-3 PROTEIN 1 236 3.4E-147
3 g9526.t11 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 236 3.4E-147
14 g9526.t11 PIRSF PIRSF000868 14-3-3 1 237 1.4E-119
5 g9526.t11 PRINTS PR00305 14-3-3 protein zeta signature 36 65 2.1E-86
8 g9526.t11 PRINTS PR00305 14-3-3 protein zeta signature 85 109 2.1E-86
6 g9526.t11 PRINTS PR00305 14-3-3 protein zeta signature 116 138 2.1E-86
4 g9526.t11 PRINTS PR00305 14-3-3 protein zeta signature 151 177 2.1E-86
9 g9526.t11 PRINTS PR00305 14-3-3 protein zeta signature 178 204 2.1E-86
7 g9526.t11 PRINTS PR00305 14-3-3 protein zeta signature 205 234 2.1E-86
1 g9526.t11 Pfam PF00244 14-3-3 protein 10 232 1.7E-108
17 g9526.t11 ProSitePatterns PS00796 14-3-3 proteins signature 1. 42 52 -
18 g9526.t11 ProSitePatterns PS00797 14-3-3 proteins signature 2. 214 233 -
16 g9526.t11 SMART SM00101 1433_4 4 237 6.5E-173
10 g9526.t11 SUPERFAMILY SSF48445 14-3-3 protein 1 234 3.53E-108

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values