Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t12 isoform g9526.t12 3895835 3904146
chr_1 g9526 g9526.t12 exon g9526.t12.exon1 3895835 3896332
chr_1 g9526 g9526.t12 cds g9526.t12.CDS1 3896277 3896332
chr_1 g9526 g9526.t12 exon g9526.t12.exon2 3896395 3896555
chr_1 g9526 g9526.t12 cds g9526.t12.CDS2 3896395 3896555
chr_1 g9526 g9526.t12 exon g9526.t12.exon3 3896620 3897109
chr_1 g9526 g9526.t12 cds g9526.t12.CDS3 3896620 3897109
chr_1 g9526 g9526.t12 exon g9526.t12.exon4 3904079 3904146
chr_1 g9526 g9526.t12 cds g9526.t12.CDS4 3904079 3904088
chr_1 g9526 g9526.t12 TSS g9526.t12 3904225 3904225
chr_1 g9526 g9526.t12 TTS g9526.t12 NA NA

Sequences

>g9526.t12 Gene=g9526 Length=1217
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGGTGAAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGT
TGAGGAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATC
CTGGCGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATT
GGAAATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGA
TATCTTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGT
ATTTTACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAA
TGACCGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGC
TATGACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGT
GTTTTATTATGAGATTTTGAACGCGCCAGACAGAGCTTGCAGATTAGCGAAAGCCGCATT
TGATGATGCTATTGCAGAATTGGATACACTCAGCGAAGAAAGCTATAAAGATTCCACACT
AATTATGCAATTATTAAGAGACAACTTAACTCTTTGGACATCAGATATGCAGGGAGATGG
TGAAGGTGAACAGAAAGAGCCCATCCAAGATGTTGAAGATCAGGATGTGTCGTAATTGAG
TCGCCATCAATAATTAAAATTCAAATACCACACTCCACCAACTCTTATATTTTCTATCAA
AAAAATCTTAAATGTTCCCTCCCCACATCATTGTATAATTTAAAATGAATCCAACAACAA
AAATCTTGTTTGTAATTTTTTTTTTCTTTAAGATTCTCTTTATGCAGGCAACAGTTAAAA
ATCATTGTTTAATTTTTAATTTTCTCAAGACACACATTTAAATTTGTGATTATTAGGAAT
GTTATAATCACTATGAAAATAACAAAGATATAAATCTTTTTTTTTGTTCGATCATTATTT
TATTTTATTATTCTTGTTCTGTTTTTATACAGTCATCTTTCTCTTTCATTTATGCATCAT
CATTTCTTTCACACTGATACAAAATAAAACAAGTCGTCTCTTTTTGTAAAGAATGAAACA
ATTTTCCATAAAATTAA

>g9526.t12 Gene=g9526 Length=238
MMVKMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGVEEK
LEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVFYYKMKGDYHRYLAEFATG
NDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVFYYEILNAPDRACRLAKAA
FDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEGEQKEPIQDVEDQDVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9526.t12 Coils Coil Coil 54 77 -
11 g9526.t12 Gene3D G3DSA:1.20.190.20 - 2 228 5.0E-117
17 g9526.t12 MobiDBLite mobidb-lite consensus disorder prediction 218 238 -
18 g9526.t12 MobiDBLite mobidb-lite consensus disorder prediction 220 238 -
2 g9526.t12 PANTHER PTHR18860 14-3-3 PROTEIN 4 236 4.6E-140
3 g9526.t12 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 4 236 4.6E-140
13 g9526.t12 PIRSF PIRSF000868 14-3-3 3 226 3.6E-110
8 g9526.t12 PRINTS PR00305 14-3-3 protein zeta signature 18 47 2.1E-86
5 g9526.t12 PRINTS PR00305 14-3-3 protein zeta signature 67 91 2.1E-86
7 g9526.t12 PRINTS PR00305 14-3-3 protein zeta signature 98 120 2.1E-86
4 g9526.t12 PRINTS PR00305 14-3-3 protein zeta signature 133 159 2.1E-86
6 g9526.t12 PRINTS PR00305 14-3-3 protein zeta signature 160 186 2.1E-86
9 g9526.t12 PRINTS PR00305 14-3-3 protein zeta signature 187 216 2.1E-86
1 g9526.t12 Pfam PF00244 14-3-3 protein 4 214 1.3E-101
15 g9526.t12 ProSitePatterns PS00796 14-3-3 proteins signature 1. 24 34 -
16 g9526.t12 ProSitePatterns PS00797 14-3-3 proteins signature 2. 196 215 -
14 g9526.t12 SMART SM00101 1433_4 2 227 1.3E-156
10 g9526.t12 SUPERFAMILY SSF48445 14-3-3 protein 4 216 7.06E-99

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values