Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t13 isoform g9526.t13 3895941 3904146
chr_1 g9526 g9526.t13 exon g9526.t13.exon1 3895941 3896312
chr_1 g9526 g9526.t13 TTS g9526.t13 3895979 3895979
chr_1 g9526 g9526.t13 cds g9526.t13.CDS1 3896296 3896312
chr_1 g9526 g9526.t13 exon g9526.t13.exon2 3896395 3896555
chr_1 g9526 g9526.t13 cds g9526.t13.CDS2 3896395 3896555
chr_1 g9526 g9526.t13 exon g9526.t13.exon3 3896620 3897109
chr_1 g9526 g9526.t13 cds g9526.t13.CDS3 3896620 3897109
chr_1 g9526 g9526.t13 exon g9526.t13.exon4 3904083 3904146
chr_1 g9526 g9526.t13 cds g9526.t13.CDS4 3904083 3904146
chr_1 g9526 g9526.t13 TSS g9526.t13 3904225 3904225

Sequences

>g9526.t13 Gene=g9526 Length=1087
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAG
GAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGG
CGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAA
ATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATC
TTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTT
TACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGAC
CGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATG
ACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTT
TATTATGAGATTTTGAACGCGCCAGACAGAGCTTGCAGATTAGCGAAAGCCGCATTTGAT
GATGCTATTGCAGAATTGGATACACTCAGCGAAGAAAGCTATAAAGATTCCACACTAATT
ATGCAATTATTAAGAGACAACTTAACTCTTTGGACATCAGATATGCAGGGAGATGCCCAT
CCAAGATGTTGAAGATCAGGATGTGTCGTAATTGAGTCGCCATCAATAATTAAAATTCAA
ATACCACACTCCACCAACTCTTATATTTTCTATCAAAAAAATCTTAAATGTTCCCTCCCC
ACATCATTGTATAATTTAAAATGAATCCAACAACAAAAATCTTGTTTGTAATTTTTTTTT
TCTTTAAGATTCTCTTTATGCAGGCAACAGTTAAAAATCATTGTTTAATTTTTAATTTTC
TCAAGACACACATTTAAATTTGTGATTATTAGGAATGTTATAATCACTATGAAAATAACA
AAGATATAAATCTTTTTTTTTGTTCGATCATTATTTTATTTTATTATTCTTGTTCTGTTT
TTATACA

>g9526.t13 Gene=g9526 Length=243
MSERENNVYKAKLAEQAERYDEMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASW
RIISSIEQKEENKGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVF
YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVF
YYEILNAPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDAH
PRC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g9526.t13 CDD cd10020 14-3-3_epsilon 4 233 1.98644E-173
13 g9526.t13 Coils Coil Coil 10 30 -
12 g9526.t13 Coils Coil Coil 72 95 -
11 g9526.t13 Gene3D G3DSA:1.20.190.20 - 1 241 6.8E-128
2 g9526.t13 PANTHER PTHR18860 14-3-3 PROTEIN 1 239 6.1E-148
3 g9526.t13 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 239 6.1E-148
14 g9526.t13 PIRSF PIRSF000868 14-3-3 1 242 2.0E-120
5 g9526.t13 PRINTS PR00305 14-3-3 protein zeta signature 36 65 2.1E-86
8 g9526.t13 PRINTS PR00305 14-3-3 protein zeta signature 85 109 2.1E-86
6 g9526.t13 PRINTS PR00305 14-3-3 protein zeta signature 116 138 2.1E-86
4 g9526.t13 PRINTS PR00305 14-3-3 protein zeta signature 151 177 2.1E-86
9 g9526.t13 PRINTS PR00305 14-3-3 protein zeta signature 178 204 2.1E-86
7 g9526.t13 PRINTS PR00305 14-3-3 protein zeta signature 205 234 2.1E-86
1 g9526.t13 Pfam PF00244 14-3-3 protein 10 232 1.9E-108
17 g9526.t13 ProSitePatterns PS00796 14-3-3 proteins signature 1. 42 52 -
18 g9526.t13 ProSitePatterns PS00797 14-3-3 proteins signature 2. 214 233 -
16 g9526.t13 SMART SM00101 1433_4 4 243 1.9E-175
10 g9526.t13 SUPERFAMILY SSF48445 14-3-3 protein 1 234 3.92E-108

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values