Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t15 isoform g9526.t15 3895941 3904146
chr_1 g9526 g9526.t15 exon g9526.t15.exon1 3895941 3896332
chr_1 g9526 g9526.t15 TTS g9526.t15 3895979 3895979
chr_1 g9526 g9526.t15 exon g9526.t15.exon2 3896395 3896555
chr_1 g9526 g9526.t15 exon g9526.t15.exon3 3896620 3896676
chr_1 g9526 g9526.t15 cds g9526.t15.CDS1 3896626 3896676
chr_1 g9526 g9526.t15 exon g9526.t15.exon4 3896820 3897109
chr_1 g9526 g9526.t15 cds g9526.t15.CDS2 3896820 3897109
chr_1 g9526 g9526.t15 exon g9526.t15.exon5 3904083 3904146
chr_1 g9526 g9526.t15 cds g9526.t15.CDS3 3904083 3904146
chr_1 g9526 g9526.t15 TSS g9526.t15 3904225 3904225

Sequences

>g9526.t15 Gene=g9526 Length=964
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAG
GAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGG
CGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAA
ATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATC
TTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAACATCC
AATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTTTATTATGAGATTTTGAACGCGCC
AGACAGAGCTTGCAGATTAGCGAAAGCCGCATTTGATGATGCTATTGCAGAATTGGATAC
ACTCAGCGAAGAAAGCTATAAAGATTCCACACTAATTATGCAATTATTAAGAGACAACTT
AACTCTTTGGACATCAGATATGCAGGGAGATGGTGAAGGTGAACAGAAAGAGCCCATCCA
AGATGTTGAAGATCAGGATGTGTCGTAATTGAGTCGCCATCAATAATTAAAATTCAAATA
CCACACTCCACCAACTCTTATATTTTCTATCAAAAAAATCTTAAATGTTCCCTCCCCACA
TCATTGTATAATTTAAAATGAATCCAACAACAAAAATCTTGTTTGTAATTTTTTTTTTCT
TTAAGATTCTCTTTATGCAGGCAACAGTTAAAAATCATTGTTTAATTTTTAATTTTCTCA
AGACACACATTTAAATTTGTGATTATTAGGAATGTTATAATCACTATGAAAATAACAAAG
ATATAAATCTTTTTTTTTGTTCGATCATTATTTTATTTTATTATTCTTGTTCTGTTTTTA
TACA

>g9526.t15 Gene=g9526 Length=134
MSERENNVYKAKLAEQAERYDEMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASW
RIISSIEQKEENKGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKTS
NPIGTRIELFGVLL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g9526.t15 Coils Coil Coil 10 30 -
8 g9526.t15 Coils Coil Coil 72 95 -
7 g9526.t15 Gene3D G3DSA:1.20.190.20 - 1 120 7.9E-54
2 g9526.t15 PANTHER PTHR18860 14-3-3 PROTEIN 1 119 8.9E-59
3 g9526.t15 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 119 8.9E-59
4 g9526.t15 PRINTS PR00305 14-3-3 protein zeta signature 36 65 6.2E-23
5 g9526.t15 PRINTS PR00305 14-3-3 protein zeta signature 85 109 6.2E-23
1 g9526.t15 Pfam PF00244 14-3-3 protein 10 118 2.5E-42
10 g9526.t15 ProSitePatterns PS00796 14-3-3 proteins signature 1. 42 52 -
11 g9526.t15 SMART SM00101 1433_4 4 132 4.2E-22
6 g9526.t15 SUPERFAMILY SSF48445 14-3-3 protein 1 118 1.31E-45

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values