Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t16 isoform g9526.t16 3895941 3904146
chr_1 g9526 g9526.t16 exon g9526.t16.exon1 3895941 3896332
chr_1 g9526 g9526.t16 TTS g9526.t16 3895979 3895979
chr_1 g9526 g9526.t16 exon g9526.t16.exon2 3896607 3897109
chr_1 g9526 g9526.t16 cds g9526.t16.CDS1 3896616 3897109
chr_1 g9526 g9526.t16 exon g9526.t16.exon3 3904083 3904146
chr_1 g9526 g9526.t16 cds g9526.t16.CDS2 3904083 3904146
chr_1 g9526 g9526.t16 TSS g9526.t16 3904225 3904225

Sequences

>g9526.t16 Gene=g9526 Length=959
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAG
GAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGG
CGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAA
ATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATC
TTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTT
TACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGAC
CGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATG
ACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTT
TATTATGAGATTTTGTAAGAATTAAATGTGAAGGTGAACAGAAAGAGCCCATCCAAGATG
TTGAAGATCAGGATGTGTCGTAATTGAGTCGCCATCAATAATTAAAATTCAAATACCACA
CTCCACCAACTCTTATATTTTCTATCAAAAAAATCTTAAATGTTCCCTCCCCACATCATT
GTATAATTTAAAATGAATCCAACAACAAAAATCTTGTTTGTAATTTTTTTTTTCTTTAAG
ATTCTCTTTATGCAGGCAACAGTTAAAAATCATTGTTTAATTTTTAATTTTCTCAAGACA
CACATTTAAATTTGTGATTATTAGGAATGTTATAATCACTATGAAAATAACAAAGATATA
AATCTTTTTTTTTGTTCGATCATTATTTTATTTTATTATTCTTGTTCTGTTTTTATACA

>g9526.t16 Gene=g9526 Length=185
MSERENNVYKAKLAEQAERYDEMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASW
RIISSIEQKEENKGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVF
YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVF
YYEIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9526.t16 Coils Coil Coil 10 30 -
11 g9526.t16 Coils Coil Coil 72 95 -
10 g9526.t16 Gene3D G3DSA:1.20.190.20 - 1 185 1.5E-96
2 g9526.t16 PANTHER PTHR18860 14-3-3 PROTEIN 1 185 8.6E-110
3 g9526.t16 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 185 8.6E-110
5 g9526.t16 PRINTS PR00305 14-3-3 protein zeta signature 36 65 3.1E-59
8 g9526.t16 PRINTS PR00305 14-3-3 protein zeta signature 85 109 3.1E-59
6 g9526.t16 PRINTS PR00305 14-3-3 protein zeta signature 116 138 3.1E-59
4 g9526.t16 PRINTS PR00305 14-3-3 protein zeta signature 151 177 3.1E-59
7 g9526.t16 PRINTS PR00305 14-3-3 protein zeta signature 178 185 3.1E-59
1 g9526.t16 Pfam PF00244 14-3-3 protein 10 185 1.2E-81
13 g9526.t16 ProSitePatterns PS00796 14-3-3 proteins signature 1. 42 52 -
14 g9526.t16 SMART SM00101 1433_4 4 185 5.9E-104
9 g9526.t16 SUPERFAMILY SSF48445 14-3-3 protein 1 185 1.16E-83

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values