Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t18 TTS g9526.t18 3895979 3895979
chr_1 g9526 g9526.t18 isoform g9526.t18 3896277 3897026
chr_1 g9526 g9526.t18 exon g9526.t18.exon1 3896277 3896332
chr_1 g9526 g9526.t18 cds g9526.t18.CDS1 3896332 3896332
chr_1 g9526 g9526.t18 exon g9526.t18.exon2 3896391 3896555
chr_1 g9526 g9526.t18 cds g9526.t18.CDS2 3896391 3896555
chr_1 g9526 g9526.t18 exon g9526.t18.exon3 3896620 3897026
chr_1 g9526 g9526.t18 cds g9526.t18.CDS3 3896620 3896933
chr_1 g9526 g9526.t18 TSS g9526.t18 NA NA

Sequences

>g9526.t18 Gene=g9526 Length=628
AAAAATGTCATTGGAGCTAGACGTGCATCCTGGCGTATCATTTCATCAATCGAACAGAAA
GAAGAAAACAAGGGAGTTGAAGAAAAATTGGAAATGATCAAAAATTATCGAGCACAAGTA
GAGAAGGAACTACGAGATATATGCTCGGATATCTTGGACGTTTTGGACAAACATCTCATA
CCATGCGCAACAACAGGCGAATCTAAAGTATTTTACTATAAGATGAAGGGCGATTATCAC
CGTTATTTGGCCGAATTTGCAACTGGAAATGACCGCAAAGAAGCAGCCGAAAATTCACTA
GTAGCTTACAAAGCTGCCAGTGATATTGCTATGACCGATCTACCACCCACACATCCAATC
CGATTGGGACTCGCATTGAACTTTTCGGTGTTTTATTATGAGATTTTGAACGCGCCAGAC
AGAGCTTGCAGATTAGCGAAAGCCGCATTTGATGATGCTATTGCAGAATTGGATACACTC
AGCGAAGAAAGCTATAAAGATTCCACACTAATTATGCAATTATTAAGAGACAACTTAACT
CTTTGGACATCAGATATGCAGGGAGATGGTTAGTGAAGGTGAACAGAAAGAGCCCATCCA
AGATGTTGAAGATCAGGATGTGTCGTAA

>g9526.t18 Gene=g9526 Length=159
MIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVFYYKMKGDYHRYLAEFATGND
RKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVFYYEILNAPDRACRLAKAAFD
DAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9526.t18 Gene3D G3DSA:1.20.190.20 - 1 159 1.6E-86
2 g9526.t18 PANTHER PTHR18860 14-3-3 PROTEIN 1 157 8.4E-99
3 g9526.t18 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 157 8.4E-99
4 g9526.t18 PRINTS PR00305 14-3-3 protein zeta signature 5 29 1.6E-70
7 g9526.t18 PRINTS PR00305 14-3-3 protein zeta signature 36 58 1.6E-70
8 g9526.t18 PRINTS PR00305 14-3-3 protein zeta signature 71 97 1.6E-70
5 g9526.t18 PRINTS PR00305 14-3-3 protein zeta signature 98 124 1.6E-70
6 g9526.t18 PRINTS PR00305 14-3-3 protein zeta signature 125 154 1.6E-70
1 g9526.t18 Pfam PF00244 14-3-3 protein 1 152 4.4E-75
11 g9526.t18 ProSitePatterns PS00797 14-3-3 proteins signature 2. 134 153 -
10 g9526.t18 SMART SM00101 1433_4 1 159 4.3E-81
9 g9526.t18 SUPERFAMILY SSF48445 14-3-3 protein 1 154 1.2E-73

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed