Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t19 TTS g9526.t19 3895979 3895979
chr_1 g9526 g9526.t19 isoform g9526.t19 3896277 3904146
chr_1 g9526 g9526.t19 exon g9526.t19.exon1 3896277 3896332
chr_1 g9526 g9526.t19 cds g9526.t19.CDS1 3896277 3896332
chr_1 g9526 g9526.t19 exon g9526.t19.exon2 3896395 3896555
chr_1 g9526 g9526.t19 cds g9526.t19.CDS2 3896395 3896555
chr_1 g9526 g9526.t19 exon g9526.t19.exon3 3896620 3897073
chr_1 g9526 g9526.t19 cds g9526.t19.CDS3 3896620 3897073
chr_1 g9526 g9526.t19 exon g9526.t19.exon4 3904083 3904146
chr_1 g9526 g9526.t19 cds g9526.t19.CDS4 3904083 3904146
chr_1 g9526 g9526.t19 TSS g9526.t19 3904225 3904225

Sequences

>g9526.t19 Gene=g9526 Length=735
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGACGTTGAATTAACAGTTGAGGAACGTAATTTATTGTCAGTCGCCTACAAAAATGTC
ATTGGAGCTAGACGTGCATCCTGGCGTATCATTTCATCAATCGAACAGAAAGAAGAAAAC
AAGGGAGTTGAAGAAAAATTGGAAATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAA
CTACGAGATATATGCTCGGATATCTTGGACGTTTTGGACAAACATCTCATACCATGCGCA
ACAACAGGCGAATCTAAAGTATTTTACTATAAGATGAAGGGCGATTATCACCGTTATTTG
GCCGAATTTGCAACTGGAAATGACCGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTAC
AAAGCTGCCAGTGATATTGCTATGACCGATCTACCACCCACACATCCAATCCGATTGGGA
CTCGCATTGAACTTTTCGGTGTTTTATTATGAGATTTTGAACGCGCCAGACAGAGCTTGC
AGATTAGCGAAAGCCGCATTTGATGATGCTATTGCAGAATTGGATACACTCAGCGAAGAA
AGCTATAAAGATTCCACACTAATTATGCAATTATTAAGAGACAACTTAACTCTTTGGACA
TCAGATATGCAGGGAGATGGTGAAGGTGAACAGAAAGAGCCCATCCAAGATGTTGAAGAT
CAGGATGTGTCGTAA

>g9526.t19 Gene=g9526 Length=244
MSERENNVYKAKLAEQAERYDDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEN
KGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVFYYKMKGDYHRYL
AEFATGNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVFYYEILNAPDRAC
RLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEGEQKEPIQDVED
QDVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9526.t19 Coils Coil Coil 60 83 -
11 g9526.t19 Gene3D G3DSA:1.20.190.20 - 1 234 1.3E-118
18 g9526.t19 MobiDBLite mobidb-lite consensus disorder prediction 224 244 -
17 g9526.t19 MobiDBLite mobidb-lite consensus disorder prediction 226 244 -
2 g9526.t19 PANTHER PTHR18860 14-3-3 PROTEIN 1 242 4.1E-139
3 g9526.t19 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 242 4.1E-139
13 g9526.t19 PIRSF PIRSF000868 14-3-3 1 232 3.7E-110
7 g9526.t19 PRINTS PR00305 14-3-3 protein zeta signature 24 53 2.2E-86
5 g9526.t19 PRINTS PR00305 14-3-3 protein zeta signature 73 97 2.2E-86
9 g9526.t19 PRINTS PR00305 14-3-3 protein zeta signature 104 126 2.2E-86
6 g9526.t19 PRINTS PR00305 14-3-3 protein zeta signature 139 165 2.2E-86
4 g9526.t19 PRINTS PR00305 14-3-3 protein zeta signature 166 192 2.2E-86
8 g9526.t19 PRINTS PR00305 14-3-3 protein zeta signature 193 222 2.2E-86
1 g9526.t19 Pfam PF00244 14-3-3 protein 11 220 2.2E-97
15 g9526.t19 ProSitePatterns PS00796 14-3-3 proteins signature 1. 30 40 -
16 g9526.t19 ProSitePatterns PS00797 14-3-3 proteins signature 2. 202 221 -
14 g9526.t19 SMART SM00101 1433_4 4 233 2.6E-165
10 g9526.t19 SUPERFAMILY SSF48445 14-3-3 protein 1 222 1.96E-101

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values