General information for g9526.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 14-3-3 protein epsilon.
Parent gene
- The parent gene g9526 is located on chr_1: 3903004..3904146 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9526 | g9526.t2 | TTS | g9526.t2 | 3894766 | 3894766 |
| chr_1 | g9526 | g9526.t2 | isoform | g9526.t2 | 3894771 | 3897099 |
| chr_1 | g9526 | g9526.t2 | exon | g9526.t2.exon1 | 3894771 | 3896332 |
| chr_1 | g9526 | g9526.t2 | cds | g9526.t2.CDS1 | 3896277 | 3896332 |
| chr_1 | g9526 | g9526.t2 | exon | g9526.t2.exon2 | 3896395 | 3896555 |
| chr_1 | g9526 | g9526.t2 | cds | g9526.t2.CDS2 | 3896395 | 3896555 |
| chr_1 | g9526 | g9526.t2 | exon | g9526.t2.exon3 | 3896620 | 3897099 |
| chr_1 | g9526 | g9526.t2 | cds | g9526.t2.CDS3 | 3896620 | 3897095 |
| chr_1 | g9526 | g9526.t2 | TSS | g9526.t2 | NA | NA |
Sequences
>g9526.t2 Gene=g9526 Length=2203
TGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAGGAACGTAATTTATT
GTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGGCGTATCATTTCATC
AATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAAATGATCAAAAATTA
TCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATCTTGGACGTTTTGGA
CAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTTTACTATAAGATGAA
GGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGACCGCAAAGAAGCAGC
CGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATGACCGATCTACCACC
CACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTTTATTATGAGATTTT
GAACGCGCCAGACAGAGCTTGCAGATTAGCGAAAGCCGCATTTGATGATGCTATTGCAGA
ATTGGATACACTCAGCGAAGAAAGCTATAAAGATTCCACACTAATTATGCAATTATTAAG
AGACAACTTAACTCTTTGGACATCAGATATGCAGGGAGATGGTGAAGGTGAACAGAAAGA
GCCCATCCAAGATGTTGAAGATCAGGATGTGTCGTAATTGAGTCGCCATCAATAATTAAA
ATTCAAATACCACACTCCACCAACTCTTATATTTTCTATCAAAAAAATCTTAAATGTTCC
CTCCCCACATCATTGTATAATTTAAAATGAATCCAACAACAAAAATCTTGTTTGTAATTT
TTTTTTTCTTTAAGATTCTCTTTATGCAGGCAACAGTTAAAAATCATTGTTTAATTTTTA
ATTTTCTCAAGACACACATTTAAATTTGTGATTATTAGGAATGTTATAATCACTATGAAA
ATAACAAAGATATAAATCTTTTTTTTTGTTCGATCATTATTTTATTTTATTATTCTTGTT
CTGTTTTTATACAGTCATCTTTCTCTTTCATTTATGCATCATCATTTCTTTCACACTGAT
ACAAAATAAAACAAGTCGTCTCTTTTTGTAAAGAATGAAACAATTTTCCATAAAATTAAG
TGAGAAAATCCAAAATTGAAAGTCTTTACAATTTAATGATAGCATTTTCATACGAGATAA
GCATATAAGAAATATAAGCAACCCTCTTTACTCCTCCTCTCCAAGAAAAGAAAAAAAATC
CTCACCATCGCGTCTCCCTTTCTCCTTCTCTTTTTAATCAGATGTGTGTGTGTAAAAAAT
TAATGAGGATAAAAACTCAATTTCTATTTAATTTTTTTTTGGTTTTTCTTATCATCATTA
CTTATCAAATCCTTTATACTTACTCTCACTTTCTCCTAGACTGAAATGGAGAAAGGAGAT
GTTTAAAAAATTATTATAAATAATAATTAAATGGAATGTGAGTCACAGTTTAAGTGTAAA
GTGAAAGTGAAAAAAGATGAAATGTGTAACCAACCAAAAGAGCTAGGGGATGCAAAAAAT
AACAATTAAAAAATTTCATCCATACTTTTGTTTTTAGTGAATATAATGGATAATTAAGCA
TTATTTACTATTATAAGACAAGAAAAACAATTTTTTAAGATCAAGCTGTCGTCGTGAGAA
AGAGAATGATTATAAATCTCTTTCAATCGAATTATATGGCATTAAATTTTACATTCTTAA
TTCAAAGCAAGAAAATATCGATAAATTTATATTATTATAATCATGGTTATACACACAAAT
TTTCATATGTCGCGCGCGCGTTTTGAAAAAAGCTTTATAGGAGGAGTTTCTTTAACAAAT
TTTTTGAGAAAAAATAATGAAATTATTTTTTTCTTTAATTTTATGAGTTTAGCTTATCGT
TTTATGTTTTCAGCTTAGTGCTTATATTTTGTTTTAAAAATGAAGAAAAGAACATTAATC
AAATCACACAATCTTATGCAAACAAATGAATTTAAAAAATCATATAGATATAGACTATAT
GTTTCGTTTTTCGGCGACATTTGTAATCACCAGATATTCTTTATTTTCTCCCTCGAAGGA
TTTATCATTTTTTCAGATGATTATTAAATTTCAACTTTTTATTTTCTGATTTCCGCTCAT
AAAACGTTAAAATAAAACAAGAAGAAAATAAGACGTTCTTATT
>g9526.t2 Gene=g9526 Length=230
MKKVASTDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGVEEKLEMIKNYR
AQVEKELRDICSDILDVLDKHLIPCATTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAE
NSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVFYYEILNAPDRACRLAKAAFDDAIAEL
DTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEGEQKEPIQDVEDQDVS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g9526.t2 | Coils | Coil | Coil | 46 | 69 | - |
| 11 | g9526.t2 | Gene3D | G3DSA:1.20.190.20 | - | 1 | 220 | 1.6E-114 |
| 18 | g9526.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 230 | - |
| 17 | g9526.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 230 | - |
| 2 | g9526.t2 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 1 | 228 | 5.9E-138 |
| 3 | g9526.t2 | PANTHER | PTHR18860:SF67 | 14-3-3 PROTEIN EPSILON | 1 | 228 | 5.9E-138 |
| 13 | g9526.t2 | PIRSF | PIRSF000868 | 14-3-3 | 1 | 218 | 3.0E-108 |
| 9 | g9526.t2 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 10 | 39 | 2.1E-86 |
| 7 | g9526.t2 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 59 | 83 | 2.1E-86 |
| 6 | g9526.t2 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 90 | 112 | 2.1E-86 |
| 5 | g9526.t2 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 125 | 151 | 2.1E-86 |
| 4 | g9526.t2 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 152 | 178 | 2.1E-86 |
| 8 | g9526.t2 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 179 | 208 | 2.1E-86 |
| 1 | g9526.t2 | Pfam | PF00244 | 14-3-3 protein | 1 | 206 | 1.4E-99 |
| 15 | g9526.t2 | ProSitePatterns | PS00796 | 14-3-3 proteins signature 1. | 16 | 26 | - |
| 16 | g9526.t2 | ProSitePatterns | PS00797 | 14-3-3 proteins signature 2. | 188 | 207 | - |
| 14 | g9526.t2 | SMART | SM00101 | 1433_4 | 1 | 219 | 6.8E-152 |
| 10 | g9526.t2 | SUPERFAMILY | SSF48445 | 14-3-3 protein | 1 | 208 | 6.8E-97 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
