Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t20 TTS g9526.t20 3895979 3895979
chr_1 g9526 g9526.t20 isoform g9526.t20 3896277 3904146
chr_1 g9526 g9526.t20 exon g9526.t20.exon1 3896277 3896332
chr_1 g9526 g9526.t20 cds g9526.t20.CDS1 3896277 3896332
chr_1 g9526 g9526.t20 exon g9526.t20.exon2 3896395 3896555
chr_1 g9526 g9526.t20 cds g9526.t20.CDS2 3896395 3896555
chr_1 g9526 g9526.t20 exon g9526.t20.exon3 3896620 3897058
chr_1 g9526 g9526.t20 cds g9526.t20.CDS3 3896620 3897058
chr_1 g9526 g9526.t20 exon g9526.t20.exon4 3904083 3904146
chr_1 g9526 g9526.t20 cds g9526.t20.CDS4 3904083 3904146
chr_1 g9526 g9526.t20 TSS g9526.t20 3904225 3904225

Sequences

>g9526.t20 Gene=g9526 Length=720
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGTTGAGGAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGT
GCATCCTGGCGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAA
AAATTGGAAATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGC
TCGGATATCTTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCT
AAAGTATTTTACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACT
GGAAATGACCGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGAT
ATTGCTATGACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTT
TCGGTGTTTTATTATGAGATTTTGAACGCGCCAGACAGAGCTTGCAGATTAGCGAAAGCC
GCATTTGATGATGCTATTGCAGAATTGGATACACTCAGCGAAGAAAGCTATAAAGATTCC
ACACTAATTATGCAATTATTAAGAGACAACTTAACTCTTTGGACATCAGATATGCAGGGA
GATGGTGAAGGTGAACAGAAAGAGCCCATCCAAGATGTTGAAGATCAGGATGTGTCGTAA

>g9526.t20 Gene=g9526 Length=239
MSERENNVYKAKLAEQAERYDVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGVEE
KLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVFYYKMKGDYHRYLAEFAT
GNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVFYYEILNAPDRACRLAKA
AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEGEQKEPIQDVEDQDVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9526.t20 Coils Coil Coil 55 78 -
11 g9526.t20 Gene3D G3DSA:1.20.190.20 - 1 229 6.5E-115
18 g9526.t20 MobiDBLite mobidb-lite consensus disorder prediction 217 239 -
19 g9526.t20 MobiDBLite mobidb-lite consensus disorder prediction 221 239 -
2 g9526.t20 PANTHER PTHR18860 14-3-3 PROTEIN 1 237 2.3E-135
3 g9526.t20 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 237 2.3E-135
14 g9526.t20 PIRSF PIRSF000868 14-3-3 1 22 5.0E-4
13 g9526.t20 PIRSF PIRSF000868 14-3-3 21 227 6.2E-105
6 g9526.t20 PRINTS PR00305 14-3-3 protein zeta signature 19 48 2.1E-86
4 g9526.t20 PRINTS PR00305 14-3-3 protein zeta signature 68 92 2.1E-86
8 g9526.t20 PRINTS PR00305 14-3-3 protein zeta signature 99 121 2.1E-86
5 g9526.t20 PRINTS PR00305 14-3-3 protein zeta signature 134 160 2.1E-86
9 g9526.t20 PRINTS PR00305 14-3-3 protein zeta signature 161 187 2.1E-86
7 g9526.t20 PRINTS PR00305 14-3-3 protein zeta signature 188 217 2.1E-86
1 g9526.t20 Pfam PF00244 14-3-3 protein 12 215 3.4E-96
16 g9526.t20 ProSitePatterns PS00796 14-3-3 proteins signature 1. 25 35 -
17 g9526.t20 ProSitePatterns PS00797 14-3-3 proteins signature 2. 197 216 -
15 g9526.t20 SMART SM00101 1433_4 4 228 1.9E-160
10 g9526.t20 SUPERFAMILY SSF48445 14-3-3 protein 1 217 1.12E-97

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values