Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t24 TTS g9526.t24 3895979 3895979
chr_1 g9526 g9526.t24 isoform g9526.t24 3896277 3904146
chr_1 g9526 g9526.t24 exon g9526.t24.exon1 3896277 3896326
chr_1 g9526 g9526.t24 cds g9526.t24.CDS1 3896277 3896326
chr_1 g9526 g9526.t24 exon g9526.t24.exon2 3896395 3896555
chr_1 g9526 g9526.t24 cds g9526.t24.CDS2 3896395 3896555
chr_1 g9526 g9526.t24 exon g9526.t24.exon3 3896620 3897109
chr_1 g9526 g9526.t24 cds g9526.t24.CDS3 3896620 3897109
chr_1 g9526 g9526.t24 exon g9526.t24.exon4 3904083 3904146
chr_1 g9526 g9526.t24 cds g9526.t24.CDS4 3904083 3904146
chr_1 g9526 g9526.t24 TSS g9526.t24 3904225 3904225

Sequences

>g9526.t24 Gene=g9526 Length=765
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAG
GAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGG
CGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAA
ATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATC
TTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTT
TACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGAC
CGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATG
ACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTT
TATTATGAGATTTTGAACGCGCCAGACAGAGCTTGCAGATTAGCGAAAGCCGCATTTGAT
GATGCTATTGCAGAATTGGATACACTCAGCGAAGAAAGCTATAAAGATTCCACACTAATT
ATGCAATTATTAAGAGACAACTTAACTCTTTGGACATCAGATATGCAGGGAGATGGTGAA
CAGAAAGAGCCCATCCAAGATGTTGAAGATCAGGATGTGTCGTAA

>g9526.t24 Gene=g9526 Length=254
MSERENNVYKAKLAEQAERYDEMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASW
RIISSIEQKEENKGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVF
YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVF
YYEILNAPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGE
QKEPIQDVEDQDVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g9526.t24 CDD cd10020 14-3-3_epsilon 4 233 5.86606E-172
13 g9526.t24 Coils Coil Coil 10 30 -
12 g9526.t24 Coils Coil Coil 72 95 -
11 g9526.t24 Gene3D G3DSA:1.20.190.20 - 1 246 6.2E-128
20 g9526.t24 MobiDBLite mobidb-lite consensus disorder prediction 235 254 -
19 g9526.t24 MobiDBLite mobidb-lite consensus disorder prediction 240 254 -
2 g9526.t24 PANTHER PTHR18860 14-3-3 PROTEIN 1 252 4.5E-150
3 g9526.t24 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 252 4.5E-150
14 g9526.t24 PIRSF PIRSF000868 14-3-3 1 244 1.5E-120
5 g9526.t24 PRINTS PR00305 14-3-3 protein zeta signature 36 65 2.6E-86
8 g9526.t24 PRINTS PR00305 14-3-3 protein zeta signature 85 109 2.6E-86
6 g9526.t24 PRINTS PR00305 14-3-3 protein zeta signature 116 138 2.6E-86
4 g9526.t24 PRINTS PR00305 14-3-3 protein zeta signature 151 177 2.6E-86
9 g9526.t24 PRINTS PR00305 14-3-3 protein zeta signature 178 204 2.6E-86
7 g9526.t24 PRINTS PR00305 14-3-3 protein zeta signature 205 234 2.6E-86
1 g9526.t24 Pfam PF00244 14-3-3 protein 10 232 2.2E-108
17 g9526.t24 ProSitePatterns PS00796 14-3-3 proteins signature 1. 42 52 -
18 g9526.t24 ProSitePatterns PS00797 14-3-3 proteins signature 2. 214 233 -
16 g9526.t24 SMART SM00101 1433_4 4 245 1.3E-178
10 g9526.t24 SUPERFAMILY SSF48445 14-3-3 protein 1 234 4.71E-108

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values