Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t30 TTS g9526.t30 3895979 3895979
chr_1 g9526 g9526.t30 isoform g9526.t30 3896277 3904146
chr_1 g9526 g9526.t30 exon g9526.t30.exon1 3896277 3896332
chr_1 g9526 g9526.t30 exon g9526.t30.exon2 3896395 3896526
chr_1 g9526 g9526.t30 cds g9526.t30.CDS1 3896452 3896526
chr_1 g9526 g9526.t30 exon g9526.t30.exon3 3896640 3897109
chr_1 g9526 g9526.t30 cds g9526.t30.CDS2 3896640 3897109
chr_1 g9526 g9526.t30 exon g9526.t30.exon4 3904083 3904146
chr_1 g9526 g9526.t30 cds g9526.t30.CDS3 3904083 3904146
chr_1 g9526 g9526.t30 TSS g9526.t30 3904225 3904225

Sequences

>g9526.t30 Gene=g9526 Length=722
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAG
GAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGG
CGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAA
ATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATC
TTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTT
TACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGAC
CGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATG
ACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGCGAAAG
CCGCATTTGATGATGCTATTGCAGAATTGGATACACTCAGCGAAGAAAGCTATAAAGATT
CCACACTAATTATGCAATTATTAAGAGACAACTTAACTCTTTGGACATCAGATATGCAGG
GAGATGGTGAAGGTGAACAGAAAGAGCCCATCCAAGATGTTGAAGATCAGGATGTGTCGT
AA

>g9526.t30 Gene=g9526 Length=202
MSERENNVYKAKLAEQAERYDEMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASW
RIISSIEQKEENKGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVF
YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSRK
PHLMMLLQNWIHSAKKAIKIPH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g9526.t30 Coils Coil Coil 10 30 -
10 g9526.t30 Coils Coil Coil 72 95 -
9 g9526.t30 Gene3D G3DSA:1.20.190.20 - 1 200 4.4E-91
2 g9526.t30 PANTHER PTHR18860 14-3-3 PROTEIN 1 178 1.3E-104
3 g9526.t30 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 178 1.3E-104
12 g9526.t30 PIRSF PIRSF000868 14-3-3 1 199 5.1E-85
5 g9526.t30 PRINTS PR00305 14-3-3 protein zeta signature 36 65 2.9E-54
7 g9526.t30 PRINTS PR00305 14-3-3 protein zeta signature 85 109 2.9E-54
6 g9526.t30 PRINTS PR00305 14-3-3 protein zeta signature 116 138 2.9E-54
4 g9526.t30 PRINTS PR00305 14-3-3 protein zeta signature 151 177 2.9E-54
1 g9526.t30 Pfam PF00244 14-3-3 protein 10 178 8.5E-76
13 g9526.t30 ProSitePatterns PS00796 14-3-3 proteins signature 1. 42 52 -
14 g9526.t30 SMART SM00101 1433_4 4 202 1.6E-100
8 g9526.t30 SUPERFAMILY SSF48445 14-3-3 protein 1 179 7.72E-79

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed