Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t31 TTS g9526.t31 3895979 3895979
chr_1 g9526 g9526.t31 isoform g9526.t31 3896277 3904146
chr_1 g9526 g9526.t31 exon g9526.t31.exon1 3896277 3896332
chr_1 g9526 g9526.t31 cds g9526.t31.CDS1 3896277 3896332
chr_1 g9526 g9526.t31 exon g9526.t31.exon2 3896395 3896540
chr_1 g9526 g9526.t31 cds g9526.t31.CDS2 3896395 3896540
chr_1 g9526 g9526.t31 exon g9526.t31.exon3 3896620 3897109
chr_1 g9526 g9526.t31 cds g9526.t31.CDS3 3896620 3897109
chr_1 g9526 g9526.t31 exon g9526.t31.exon4 3904083 3904146
chr_1 g9526 g9526.t31 cds g9526.t31.CDS4 3904083 3904146
chr_1 g9526 g9526.t31 TSS g9526.t31 3904225 3904225

Sequences

>g9526.t31 Gene=g9526 Length=756
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAG
GAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGG
CGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAA
ATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATC
TTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTT
TACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGAC
CGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATG
ACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTT
TATTATGAGATTTTAGCTTGCAGATTAGCGAAAGCCGCATTTGATGATGCTATTGCAGAA
TTGGATACACTCAGCGAAGAAAGCTATAAAGATTCCACACTAATTATGCAATTATTAAGA
GACAACTTAACTCTTTGGACATCAGATATGCAGGGAGATGGTGAAGGTGAACAGAAAGAG
CCCATCCAAGATGTTGAAGATCAGGATGTGTCGTAA

>g9526.t31 Gene=g9526 Length=251
MSERENNVYKAKLAEQAERYDEMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASW
RIISSIEQKEENKGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVF
YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVF
YYEILACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEGEQKE
PIQDVEDQDVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9526.t31 Coils Coil Coil 10 30 -
11 g9526.t31 Coils Coil Coil 72 95 -
10 g9526.t31 Gene3D G3DSA:1.20.190.20 - 1 241 5.3E-123
18 g9526.t31 MobiDBLite mobidb-lite consensus disorder prediction 231 251 -
17 g9526.t31 MobiDBLite mobidb-lite consensus disorder prediction 233 251 -
2 g9526.t31 PANTHER PTHR18860 14-3-3 PROTEIN 1 249 3.3E-144
3 g9526.t31 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 249 3.3E-144
13 g9526.t31 PIRSF PIRSF000868 14-3-3 1 239 2.3E-114
5 g9526.t31 PRINTS PR00305 14-3-3 protein zeta signature 36 65 4.0E-60
7 g9526.t31 PRINTS PR00305 14-3-3 protein zeta signature 85 109 4.0E-60
6 g9526.t31 PRINTS PR00305 14-3-3 protein zeta signature 116 138 4.0E-60
4 g9526.t31 PRINTS PR00305 14-3-3 protein zeta signature 173 199 4.0E-60
8 g9526.t31 PRINTS PR00305 14-3-3 protein zeta signature 200 229 4.0E-60
1 g9526.t31 Pfam PF00244 14-3-3 protein 10 227 1.7E-102
15 g9526.t31 ProSitePatterns PS00796 14-3-3 proteins signature 1. 42 52 -
16 g9526.t31 ProSitePatterns PS00797 14-3-3 proteins signature 2. 209 228 -
14 g9526.t31 SMART SM00101 1433_4 4 240 6.0E-172
9 g9526.t31 SUPERFAMILY SSF48445 14-3-3 protein 1 229 2.62E-103

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values