General information for g9526.t32
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 14-3-3 protein epsilon.
Parent gene
- The parent gene g9526 is located on chr_1: 3903004..3904146 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9526 | g9526.t32 | TTS | g9526.t32 | 3895979 | 3895979 |
| chr_1 | g9526 | g9526.t32 | isoform | g9526.t32 | 3896393 | 3896950 |
| chr_1 | g9526 | g9526.t32 | exon | g9526.t32.exon1 | 3896393 | 3896555 |
| chr_1 | g9526 | g9526.t32 | cds | g9526.t32.CDS1 | 3896393 | 3896555 |
| chr_1 | g9526 | g9526.t32 | exon | g9526.t32.exon2 | 3896620 | 3896950 |
| chr_1 | g9526 | g9526.t32 | cds | g9526.t32.CDS2 | 3896620 | 3896933 |
| chr_1 | g9526 | g9526.t32 | TSS | g9526.t32 | NA | NA |
Sequences
>g9526.t32 Gene=g9526 Length=494
TTGAAGAAAAATTGGAAATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAG
ATATATGCTCGGATATCTTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAG
GCGAATCTAAAGTATTTTACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAAT
TTGCAACTGGAAATGACCGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTG
CCAGTGATATTGCTATGACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCAT
TGAACTTTTCGGTGTTTTATTATGAGATTTTGAACGCGCCAGACAGAGCTTGCAGATTAG
CGAAAGCCGCATTTGATGATGCTATTGCAGAATTGGATACACTCAGCGAAGAAAGCTATA
AAGATTCCACACTAATTATGCAATTATTAAGAGACAACTTAACTCTTTGGACATCAGATA
TGCAGGGAGATGGT
>g9526.t32 Gene=g9526 Length=159
MIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVFYYKMKGDYHRYLAEFATGND
RKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVFYYEILNAPDRACRLAKAAFD
DAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g9526.t32 | Gene3D | G3DSA:1.20.190.20 | - | 1 | 159 | 1.6E-86 |
| 2 | g9526.t32 | PANTHER | PTHR18860 | 14-3-3 PROTEIN | 1 | 157 | 8.4E-99 |
| 3 | g9526.t32 | PANTHER | PTHR18860:SF67 | 14-3-3 PROTEIN EPSILON | 1 | 157 | 8.4E-99 |
| 4 | g9526.t32 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 5 | 29 | 1.6E-70 |
| 7 | g9526.t32 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 36 | 58 | 1.6E-70 |
| 8 | g9526.t32 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 71 | 97 | 1.6E-70 |
| 5 | g9526.t32 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 98 | 124 | 1.6E-70 |
| 6 | g9526.t32 | PRINTS | PR00305 | 14-3-3 protein zeta signature | 125 | 154 | 1.6E-70 |
| 1 | g9526.t32 | Pfam | PF00244 | 14-3-3 protein | 1 | 152 | 4.4E-75 |
| 11 | g9526.t32 | ProSitePatterns | PS00797 | 14-3-3 proteins signature 2. | 134 | 153 | - |
| 10 | g9526.t32 | SMART | SM00101 | 1433_4 | 1 | 159 | 4.3E-81 |
| 9 | g9526.t32 | SUPERFAMILY | SSF48445 | 14-3-3 protein | 1 | 154 | 1.2E-73 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
