Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t7 TTS g9526.t7 3894766 3894766
chr_1 g9526 g9526.t7 isoform g9526.t7 3895631 3904146
chr_1 g9526 g9526.t7 exon g9526.t7.exon1 3895631 3896332
chr_1 g9526 g9526.t7 cds g9526.t7.CDS1 3896277 3896332
chr_1 g9526 g9526.t7 exon g9526.t7.exon2 3896395 3896555
chr_1 g9526 g9526.t7 cds g9526.t7.CDS2 3896395 3896555
chr_1 g9526 g9526.t7 exon g9526.t7.exon3 3896620 3897096
chr_1 g9526 g9526.t7 cds g9526.t7.CDS3 3896620 3897095
chr_1 g9526 g9526.t7 exon g9526.t7.exon4 3904083 3904146
chr_1 g9526 g9526.t7 TSS g9526.t7 3904225 3904225

Sequences

>g9526.t7 Gene=g9526 Length=1404
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAGGAACGTAATTTAT
TGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGGCGTATCATTTCAT
CAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAAATGATCAAAAATT
ATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATCTTGGACGTTTTGG
ACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTTTACTATAAGATGA
AGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGACCGCAAAGAAGCAG
CCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATGACCGATCTACCAC
CCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTTTATTATGAGATTT
TGAACGCGCCAGACAGAGCTTGCAGATTAGCGAAAGCCGCATTTGATGATGCTATTGCAG
AATTGGATACACTCAGCGAAGAAAGCTATAAAGATTCCACACTAATTATGCAATTATTAA
GAGACAACTTAACTCTTTGGACATCAGATATGCAGGGAGATGGTGAAGGTGAACAGAAAG
AGCCCATCCAAGATGTTGAAGATCAGGATGTGTCGTAATTGAGTCGCCATCAATAATTAA
AATTCAAATACCACACTCCACCAACTCTTATATTTTCTATCAAAAAAATCTTAAATGTTC
CCTCCCCACATCATTGTATAATTTAAAATGAATCCAACAACAAAAATCTTGTTTGTAATT
TTTTTTTTCTTTAAGATTCTCTTTATGCAGGCAACAGTTAAAAATCATTGTTTAATTTTT
AATTTTCTCAAGACACACATTTAAATTTGTGATTATTAGGAATGTTATAATCACTATGAA
AATAACAAAGATATAAATCTTTTTTTTTGTTCGATCATTATTTTATTTTATTATTCTTGT
TCTGTTTTTATACAGTCATCTTTCTCTTTCATTTATGCATCATCATTTCTTTCACACTGA
TACAAAATAAAACAAGTCGTCTCTTTTTGTAAAGAATGAAACAATTTTCCATAAAATTAA
GTGAGAAAATCCAAAATTGAAAGTCTTTACAATTTAATGATAGCATTTTCATACGAGATA
AGCATATAAGAAATATAAGCAACCCTCTTTACTCCTCCTCTCCAAGAAAAGAAAAAAAAT
CCTCACCATCGCGTCTCCCTTTCTCCTTCTCTTTTTAATCAGATGTGTGTGTGTAAAAAA
TTAATGAGGATAAAAACTCAATTT

>g9526.t7 Gene=g9526 Length=230
MKKVASTDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGVEEKLEMIKNYR
AQVEKELRDICSDILDVLDKHLIPCATTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAE
NSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVFYYEILNAPDRACRLAKAAFDDAIAEL
DTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEGEQKEPIQDVEDQDVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9526.t7 Coils Coil Coil 46 69 -
11 g9526.t7 Gene3D G3DSA:1.20.190.20 - 1 220 1.6E-114
18 g9526.t7 MobiDBLite mobidb-lite consensus disorder prediction 210 230 -
17 g9526.t7 MobiDBLite mobidb-lite consensus disorder prediction 212 230 -
2 g9526.t7 PANTHER PTHR18860 14-3-3 PROTEIN 1 228 5.9E-138
3 g9526.t7 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 228 5.9E-138
13 g9526.t7 PIRSF PIRSF000868 14-3-3 1 218 3.0E-108
9 g9526.t7 PRINTS PR00305 14-3-3 protein zeta signature 10 39 2.1E-86
7 g9526.t7 PRINTS PR00305 14-3-3 protein zeta signature 59 83 2.1E-86
6 g9526.t7 PRINTS PR00305 14-3-3 protein zeta signature 90 112 2.1E-86
5 g9526.t7 PRINTS PR00305 14-3-3 protein zeta signature 125 151 2.1E-86
4 g9526.t7 PRINTS PR00305 14-3-3 protein zeta signature 152 178 2.1E-86
8 g9526.t7 PRINTS PR00305 14-3-3 protein zeta signature 179 208 2.1E-86
1 g9526.t7 Pfam PF00244 14-3-3 protein 1 206 1.4E-99
15 g9526.t7 ProSitePatterns PS00796 14-3-3 proteins signature 1. 16 26 -
16 g9526.t7 ProSitePatterns PS00797 14-3-3 proteins signature 2. 188 207 -
14 g9526.t7 SMART SM00101 1433_4 1 219 6.8E-152
10 g9526.t7 SUPERFAMILY SSF48445 14-3-3 protein 1 208 6.8E-97

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values