Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t8 TTS g9526.t8 3894766 3894766
chr_1 g9526 g9526.t8 isoform g9526.t8 3895631 3904146
chr_1 g9526 g9526.t8 exon g9526.t8.exon1 3895631 3895764
chr_1 g9526 g9526.t8 exon g9526.t8.exon2 3895835 3896332
chr_1 g9526 g9526.t8 cds g9526.t8.CDS1 3896277 3896332
chr_1 g9526 g9526.t8 exon g9526.t8.exon3 3896395 3896555
chr_1 g9526 g9526.t8 cds g9526.t8.CDS2 3896395 3896555
chr_1 g9526 g9526.t8 exon g9526.t8.exon4 3896620 3897109
chr_1 g9526 g9526.t8 cds g9526.t8.CDS3 3896620 3897109
chr_1 g9526 g9526.t8 exon g9526.t8.exon5 3904083 3904146
chr_1 g9526 g9526.t8 cds g9526.t8.CDS4 3904083 3904146
chr_1 g9526 g9526.t8 TSS g9526.t8 3904225 3904225

Sequences

>g9526.t8 Gene=g9526 Length=1347
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAG
GAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGG
CGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAA
ATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATC
TTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTT
TACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGAC
CGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATG
ACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTT
TATTATGAGATTTTGAACGCGCCAGACAGAGCTTGCAGATTAGCGAAAGCCGCATTTGAT
GATGCTATTGCAGAATTGGATACACTCAGCGAAGAAAGCTATAAAGATTCCACACTAATT
ATGCAATTATTAAGAGACAACTTAACTCTTTGGACATCAGATATGCAGGGAGATGGTGAA
GGTGAACAGAAAGAGCCCATCCAAGATGTTGAAGATCAGGATGTGTCGTAATTGAGTCGC
CATCAATAATTAAAATTCAAATACCACACTCCACCAACTCTTATATTTTCTATCAAAAAA
ATCTTAAATGTTCCCTCCCCACATCATTGTATAATTTAAAATGAATCCAACAACAAAAAT
CTTGTTTGTAATTTTTTTTTTCTTTAAGATTCTCTTTATGCAGGCAACAGTTAAAAATCA
TTGTTTAATTTTTAATTTTCTCAAGACACACATTTAAATTTGTGATTATTAGGAATGTTA
TAATCACTATGAAAATAACAAAGATATAAATCTTTTTTTTTGTTCGATCATTATTTTATT
TTATTATTCTTGTTCTGTTTTTATACAGTCATCTTTCTCTTTCATTTATGCATCATCATT
TCTTTCACACTGATACAAAATAAAACAAGTCGTCTCTTTTTGTAAAGAATGAAACAATTT
TCCATAAAATTAAAAATATAAGCAACCCTCTTTACTCCTCCTCTCCAAGAAAAGAAAAAA
AATCCTCACCATCGCGTCTCCCTTTCTCCTTCTCTTTTTAATCAGATGTGTGTGTGTAAA
AAATTAATGAGGATAAAAACTCAATTT

>g9526.t8 Gene=g9526 Length=256
MSERENNVYKAKLAEQAERYDEMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASW
RIISSIEQKEENKGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVF
YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVF
YYEILNAPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGE
GEQKEPIQDVEDQDVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g9526.t8 CDD cd10020 14-3-3_epsilon 4 233 4.33143E-172
13 g9526.t8 Coils Coil Coil 10 30 -
12 g9526.t8 Coils Coil Coil 72 95 -
11 g9526.t8 Gene3D G3DSA:1.20.190.20 - 1 246 5.3E-128
20 g9526.t8 MobiDBLite mobidb-lite consensus disorder prediction 236 256 -
19 g9526.t8 MobiDBLite mobidb-lite consensus disorder prediction 238 256 -
2 g9526.t8 PANTHER PTHR18860 14-3-3 PROTEIN 1 254 1.8E-151
3 g9526.t8 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 254 1.8E-151
14 g9526.t8 PIRSF PIRSF000868 14-3-3 1 244 1.9E-120
5 g9526.t8 PRINTS PR00305 14-3-3 protein zeta signature 36 65 2.6E-86
8 g9526.t8 PRINTS PR00305 14-3-3 protein zeta signature 85 109 2.6E-86
6 g9526.t8 PRINTS PR00305 14-3-3 protein zeta signature 116 138 2.6E-86
4 g9526.t8 PRINTS PR00305 14-3-3 protein zeta signature 151 177 2.6E-86
9 g9526.t8 PRINTS PR00305 14-3-3 protein zeta signature 178 204 2.6E-86
7 g9526.t8 PRINTS PR00305 14-3-3 protein zeta signature 205 234 2.6E-86
1 g9526.t8 Pfam PF00244 14-3-3 protein 10 232 2.3E-108
17 g9526.t8 ProSitePatterns PS00796 14-3-3 proteins signature 1. 42 52 -
18 g9526.t8 ProSitePatterns PS00797 14-3-3 proteins signature 2. 214 233 -
16 g9526.t8 SMART SM00101 1433_4 4 245 3.1E-180
10 g9526.t8 SUPERFAMILY SSF48445 14-3-3 protein 1 234 4.84E-108

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values