Gene loci information

Transcript annotation

  • This transcript has been annotated as 14-3-3 protein epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9526 g9526.t9 TTS g9526.t9 3894766 3894766
chr_1 g9526 g9526.t9 isoform g9526.t9 3895764 3904146
chr_1 g9526 g9526.t9 exon g9526.t9.exon1 3895764 3896332
chr_1 g9526 g9526.t9 exon g9526.t9.exon2 3896395 3896544
chr_1 g9526 g9526.t9 cds g9526.t9.CDS1 3896511 3896544
chr_1 g9526 g9526.t9 exon g9526.t9.exon3 3896620 3897109
chr_1 g9526 g9526.t9 cds g9526.t9.CDS2 3896620 3897109
chr_1 g9526 g9526.t9 exon g9526.t9.exon4 3904083 3904146
chr_1 g9526 g9526.t9 cds g9526.t9.CDS3 3904083 3904146
chr_1 g9526 g9526.t9 TSS g9526.t9 3904225 3904225

Sequences

>g9526.t9 Gene=g9526 Length=1273
ATGTCTGAACGAGAGAATAACGTTTACAAGGCTAAATTGGCAGAACAAGCAGAACGATAT
GATGAAATGGTTGATGCTATGAAGAAGGTGGCTTCAACAGACGTTGAATTAACAGTTGAG
GAACGTAATTTATTGTCAGTCGCCTACAAAAATGTCATTGGAGCTAGACGTGCATCCTGG
CGTATCATTTCATCAATCGAACAGAAAGAAGAAAACAAGGGAGTTGAAGAAAAATTGGAA
ATGATCAAAAATTATCGAGCACAAGTAGAGAAGGAACTACGAGATATATGCTCGGATATC
TTGGACGTTTTGGACAAACATCTCATACCATGCGCAACAACAGGCGAATCTAAAGTATTT
TACTATAAGATGAAGGGCGATTATCACCGTTATTTGGCCGAATTTGCAACTGGAAATGAC
CGCAAAGAAGCAGCCGAAAATTCACTAGTAGCTTACAAAGCTGCCAGTGATATTGCTATG
ACCGATCTACCACCCACACATCCAATCCGATTGGGACTCGCATTGAACTTTTCGGTGTTT
TATTATGAGATTTTACAGAGCTTGCAGATTAGCGAAAGCCGCATTTGATGATGCTATTGC
AGAATTGGATACACTCAGCGAAGAAAGCTATAAAGATTCCACACTAATTATGCAATTATT
AAGAGACAACTTAACTCTTTGGACATCAGATATGCAGGGAGATGGTGAAGGTGAACAGAA
AGAGCCCATCCAAGATGTTGAAGATCAGGATGTGTCGTAATTGAGTCGCCATCAATAATT
AAAATTCAAATACCACACTCCACCAACTCTTATATTTTCTATCAAAAAAATCTTAAATGT
TCCCTCCCCACATCATTGTATAATTTAAAATGAATCCAACAACAAAAATCTTGTTTGTAA
TTTTTTTTTTCTTTAAGATTCTCTTTATGCAGGCAACAGTTAAAAATCATTGTTTAATTT
TTAATTTTCTCAAGACACACATTTAAATTTGTGATTATTAGGAATGTTATAATCACTATG
AAAATAACAAAGATATAAATCTTTTTTTTTGTTCGATCATTATTTTATTTTATTATTCTT
GTTCTGTTTTTATACAGTCATCTTTCTCTTTCATTTATGCATCATCATTTCTTTCACACT
GATACAAAATAAAACAAGTCGTCTCTTTTTGTAAAGAATGAAACAATTTTCCATAAAATT
AAGTGAGAAAATCCAAAATTGAAAGTCTTTACAATTTAATGATAGCATTTTCATACGAGA
TAAGCATATAAGA

>g9526.t9 Gene=g9526 Length=195
MSERENNVYKAKLAEQAERYDEMVDAMKKVASTDVELTVEERNLLSVAYKNVIGARRASW
RIISSIEQKEENKGVEEKLEMIKNYRAQVEKELRDICSDILDVLDKHLIPCATTGESKVF
YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTDLPPTHPIRLGLALNFSVF
YYEILQSLQISESRI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9526.t9 Coils Coil Coil 10 30 -
11 g9526.t9 Coils Coil Coil 72 95 -
10 g9526.t9 Gene3D G3DSA:1.20.190.20 - 1 191 2.0E-97
2 g9526.t9 PANTHER PTHR18860 14-3-3 PROTEIN 1 187 7.1E-111
3 g9526.t9 PANTHER PTHR18860:SF67 14-3-3 PROTEIN EPSILON 1 187 7.1E-111
5 g9526.t9 PRINTS PR00305 14-3-3 protein zeta signature 36 65 4.0E-58
8 g9526.t9 PRINTS PR00305 14-3-3 protein zeta signature 85 109 4.0E-58
7 g9526.t9 PRINTS PR00305 14-3-3 protein zeta signature 116 138 4.0E-58
4 g9526.t9 PRINTS PR00305 14-3-3 protein zeta signature 151 177 4.0E-58
6 g9526.t9 PRINTS PR00305 14-3-3 protein zeta signature 178 195 4.0E-58
1 g9526.t9 Pfam PF00244 14-3-3 protein 10 187 2.7E-82
13 g9526.t9 ProSitePatterns PS00796 14-3-3 proteins signature 1. 42 52 -
14 g9526.t9 SMART SM00101 1433_4 4 192 2.9E-108
9 g9526.t9 SUPERFAMILY SSF48445 14-3-3 protein 1 189 1.83E-84

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values