General information for g9545.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9545 is located on chr_1: 4019512..4020047 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9545 | g9545.t2 | isoform | g9545.t2 | 4016355 | 4019510 |
| chr_1 | g9545 | g9545.t2 | exon | g9545.t2.exon1 | 4016355 | 4016407 |
| chr_1 | g9545 | g9545.t2 | exon | g9545.t2.exon2 | 4016461 | 4017001 |
| chr_1 | g9545 | g9545.t2 | cds | g9545.t2.CDS1 | 4016776 | 4017001 |
| chr_1 | g9545 | g9545.t2 | exon | g9545.t2.exon3 | 4017065 | 4017231 |
| chr_1 | g9545 | g9545.t2 | cds | g9545.t2.CDS2 | 4017065 | 4017150 |
| chr_1 | g9545 | g9545.t2 | exon | g9545.t2.exon4 | 4017290 | 4017430 |
| chr_1 | g9545 | g9545.t2 | exon | g9545.t2.exon5 | 4017864 | 4018067 |
| chr_1 | g9545 | g9545.t2 | exon | g9545.t2.exon6 | 4018136 | 4019510 |
| chr_1 | g9545 | g9545.t2 | TSS | g9545.t2 | 4020151 | 4020151 |
| chr_1 | g9545 | g9545.t2 | TTS | g9545.t2 | NA | NA |
Sequences
>g9545.t2 Gene=g9545 Length=2481
TGTAAGTTTATTTATAAAAAGACATTTAATCTAAAAATAACATTTTATTCTATTTTTAAA
TAGATTATCTCCCAGGTCATAATGACAACACTTACTTCAATGATCCTGCTGGCTTGCAAA
TTTTACACTGTGTGCAAGATAATTGTACTGGTGGTGAAAATTTTTTAATTGATGGCTATC
AAGTTGCTACAAAAATTAAGAAAAATTATCCTGAAATTTACAAACGACTTACAACAACAC
TTGTGCCAGCAGAATTCATTGAAAATGATCGTCATCATTCTTATTGTGCTCCAATTTTTC
AACTTCATCCATTGACTAAAGAAATTCTTCAAATTCGTTTCAATGATTCCGATCGAGCAC
CATTTAATACTTTGAAACAAACAGAAGTTCGTCAATTTTATAAAGATTTAAAGTTTTTGG
CAAATGAATTCAACCACGATGAAAATCAAATTGTTTTCAAGTTAAAGCCAGGTAGAGTTA
TGATTTTTGACAATTGGAGAGTTCTTCATGGTCGCTATAGTTATGATGGATGTCGTACAA
TGAGTGGCAGTTATGTTTCAAGGACTGAATTTCAGTCAGTGTTGCGTGTCAATGGTTTGA
TAAATTGAATATATGGGTGTGAATATATGACAGATGATGATGAAATATTAGAAATAAAGA
AATATGAAATTCAATATTGCAATGAAATGTCCTTTTCTTTTCATTTTCATACATACATAA
ATGACAGTCATTTCAAGGAGAAAGATATAATTGAAAATTGCATCTTTCATTTTATATAAA
CCTTCTTATCATCGTATTTGCACACATAAAGAACCCTCCCTTATTGAAAATCAATTGAAA
TACGTGAAATGCAACCAAATCACCTAAATGATTGTTGTTACGTGTTCGAATGCTCTCATT
CTCGAGATATACAGACAGGAAAAAAGAGTGCTGTTGATTTAGCGATTTCACATTTGTCAT
GTCATGATGAAAAATTTTCTTCTCTTCTGCAAGTTTTAATCAATGGCTTCTCGTGAAGTG
TCATTGTGAAAATTAATTGACAGATAGATGAAATGAATGACCTAATTGTTTATTCAATTT
TATCAATGTCTCTTTTTGTCATGTATTTTTTTTATCAAATTAAAGCTAATAAAATTTATT
TTTAAAACTCTTCTATAGCTCAAAATGAGTGATATCGATACTAAGTGTTTCATTATTCCT
ATATTGTCTCAACAGCTCTTTTACCAAGTCCTCAATGTCAATTCTGTTGACAATTGTCTG
TAGTTTATTAACAATTGGCTTTTCAATTGCATCAACAATTTGATATCTCAGCAAATTCGG
CAATACATTCACAAAAAGTTCAATGACATAATCAAAAGTTCCCAAGCCATTGCTCATGAT
TTGAATATTGCCCAAATTTATTTGAAGGTCATTTATTATCAACTGCTTCTTTAAGTTCAT
AGGTTGTCTGAGTGAAATAAATATTTTGATGTATTGTACACTAAATTGCACATTTCCTCT
TCTCGTTATCATTCCTTTTGCTAAAGACATTTCCCATGACGTTTTTCCTTTTATTTCTTG
TGTTCCAACTTCTAAATCTATCACTAAATTGTTATCAATCATTTGTAAAATTAAATCACC
AACTCGATAAAATGATGACACACCATGAATAACTGTGTCGTATGTCTTTATTCCAATTAT
TCCACCATTTTCATATGTATTGATTTTTAAAGGATCATACATCTCACGAACTTTCTTTCT
TGACTCAGCAATAATATAGTCAACTGGACTGATTGAATTCGGAATAAGTCCAAATTCTCC
AATGATTTTGTCAATGTTTGCATCGAATTCGATTCTGATTTTTTCTTTTGCATCTTTTAA
TATATATGGCTTGACATTGTCAAACAAGACATTGCCAGCGGAATTGGCAAAACTCTGGAA
AAATGACGCAAGAAGACCCAAATTCGAGAAACTCACGTTCATTTTAGCCAACGTAATGTC
AGCATCAATTTCATTTGTTCTAATTTTACCTTCGCGATTAATTTTGAGATTTGCGTTTGC
TGTGACGACAACATTTGAGATAATTATGACAAATGGACCTTGCGAGCGTGCAAGAAATGA
ACTTAGCGAGTAATTTCCCCTCAAGATGAGCGTGTCAAAAAGCAAACCACAATTTGCTTC
CATTTTTCTATCAACTTCCACAGTCACATTTTGTATTCGAAACTGCGATACACCATAAGC
CTTGACTTTTGACATAAATAATTTGCCAACATTTATATTTTGCTGTACATCGGGAACACT
AATTGGGTCAGGAATTTCTAGTGAAGGAATTCCAACAGGATCATCATTTTTGAAATGATC
AATAATTTGATATACTTTTTGTGTCATTTTATCATCAATTTCTGTATTTTGTTCATTGGT
ACTCCAGTAATTTTCTAAATTATCATCTTGTCCAAAAACACAAATAAATAAGCAAGAAAA
AATTAATACAATTTTCAGCAT
>g9545.t2 Gene=g9545 Length=103
MILSMFASNSILIFSFASFNIYGLTLSNKTLPAELAKLWKNDARRPKFEKLTFILANVMS
ASISFVLILPSRLILRFAFAVTTTFEIIMTNGPCERARNELSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9545.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 8 | g9545.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 27 | - |
| 4 | g9545.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 28 | 47 | - |
| 9 | g9545.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 48 | 68 | - |
| 5 | g9545.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 69 | 73 | - |
| 7 | g9545.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 94 | - |
| 3 | g9545.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 95 | 103 | - |
| 2 | g9545.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
| 1 | g9545.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 53 | 75 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed