General information for g9545.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trimethyllysine dioxygenase, mitochondrial.
Parent gene
- The parent gene g9545 is located on chr_1: 4019512..4020047 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9545 | g9545.t3 | TTS | g9545.t3 | 4018831 | 4018831 |
| chr_1 | g9545 | g9545.t3 | isoform | g9545.t3 | 4019512 | 4020047 |
| chr_1 | g9545 | g9545.t3 | exon | g9545.t3.exon1 | 4019512 | 4020047 |
| chr_1 | g9545 | g9545.t3 | cds | g9545.t3.CDS1 | 4019514 | 4020047 |
| chr_1 | g9545 | g9545.t3 | TSS | g9545.t3 | 4020151 | 4020151 |
Sequences
>g9545.t3 Gene=g9545 Length=536
ATGTCAAAGTTTGAAACAATTAAAATTAAATTTCATGAAAATCTTTATGAAATTGACACG
TTTTGGTTACGAGATCATTGCCGATGCGTTCATTGTTACAATATTGAAACTTTCCAACGT
AAGACTAATATTTTGGATATACCAGATGATATCAATGCAAGTGATTTTATAATAAAGAAC
GGAAAACTACAAGTTTTCTGGAATGACGGACACGAATCTTCATATGACCTTGATTTCATA
TTGAAAAATCTTAATCCGCAATCTGATAAATACAAAAGAGTTTATTGGACTAAAGAAACA
TTTAAAGTGCTTGAAAAAGTTGAAATGAGCGATTTTCTTACCAATTCTGATACAAAATTG
GCAGTTTTGAAAAACCTTTACCTTTATGGGTTTGCATTTATCGATGGAGTTGAACCAACT
GAAGAAGGAACAAAGCAGTGCATTGAAAATCTTTTTCAAATTCAAAAAACTTTCTTTGGA
GAAATGTGGACATTTTCTGATGCAAATTTAGATCATTGCGATACAGCATATACAAA
>g9545.t3 Gene=g9545 Length=178
MSKFETIKIKFHENLYEIDTFWLRDHCRCVHCYNIETFQRKTNILDIPDDINASDFIIKN
GKLQVFWNDGHESSYDLDFILKNLNPQSDKYKRVYWTKETFKVLEKVEMSDFLTNSDTKL
AVLKNLYLYGFAFIDGVEPTEEGTKQCIENLFQIQKTFFGEMWTFSDANLDHCDTAYT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9545.t3 | Gene3D | G3DSA:3.30.2020.30 | - | 1 | 83 | 0 |
| 4 | g9545.t3 | Gene3D | G3DSA:3.60.130.10 | - | 84 | 178 | 0 |
| 2 | g9545.t3 | PANTHER | PTHR10696:SF3 | TRIMETHYLLYSINE DIOXYGENASE, MITOCHONDRIAL | 18 | 178 | 0 |
| 3 | g9545.t3 | PANTHER | PTHR10696 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED | 18 | 178 | 0 |
| 1 | g9545.t3 | Pfam | PF06155 | Gamma-butyrobetaine hydroxylase-like, N-terminal | 6 | 79 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed