General information for g9562.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9562 is located on chr_1: 4062645..4064527 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9562 | g9562.t1 | TSS | g9562.t1 | 4062330 | 4062330 |
| chr_1 | g9562 | g9562.t1 | isoform | g9562.t1 | 4062645 | 4064527 |
| chr_1 | g9562 | g9562.t1 | exon | g9562.t1.exon1 | 4062645 | 4062705 |
| chr_1 | g9562 | g9562.t1 | cds | g9562.t1.CDS1 | 4062645 | 4062705 |
| chr_1 | g9562 | g9562.t1 | exon | g9562.t1.exon2 | 4062765 | 4064527 |
| chr_1 | g9562 | g9562.t1 | cds | g9562.t1.CDS2 | 4062765 | 4064527 |
| chr_1 | g9562 | g9562.t1 | TTS | g9562.t1 | NA | NA |
Sequences
>g9562.t1 Gene=g9562 Length=1824
ATGTTGTTAATTTACGGTCTTTTAGTTTTTCTTCAATTTTTCAAATTTTCCTATCAATTT
ACTGATAAAATTGTAAGAATTAAAATAACAAATGCAACAGATGATCAAAATGAAATGATA
TTCATAGACAGAATTGATTTATCTGCTAGGCAATCAGTCATAATAAATGTAGAGAAATTT
AATAACAGCCATTTTGACTTTGCAACTATTCAAATACATAGTTACTATCAAAACTTAACT
ATCTTTGATGATGATAACGAAGATATTTACTATGAAGCTCACATTGGATTTATAATCAAT
TTCAATGATTCAAATTCAAAAACATTGAAAATAAGCAATGAAAATCATGATACGAAACAT
ATATTGGTAGCACTAATTGGTTATAAAGATTCTTCACCAACTCCTGGAGGATGTAGTGTT
AAAAAAGATAAGCCAAATAATATCAATTTATATATGACAGAAGAGACTGATAATTTTCTC
ATATTATCCACTCCCGCTGCTTCAGAAGCACAACATATTCTATGTGATGATTCAGATTTA
TTGTATGACACTTATTACACCTACATTGATCAATTGGATTTTTCTATTGATTCTTATTTC
GATGCATTAGAGAAAATGATTTTTACCGAAATATTTTCAACTTATCATGTTAAGAACATT
GTTTCTAGTAGAAAACATATGTTTGAAGCAGTCGCTGGCAGAGGATTGATAGTAAATACT
GTAGTGAGAAATAGAAAGACTGGAGAAATGGCATTTTATTTACCATTTGTAACTTATTCA
TGTCCACAAAACACATGGCTTGCACACTGTTCAAATATGAGCTTTCTGAAACGAGGAATT
GGTATTGTTCTTGCAATTCATTCTGTTGTGACAATGCTTAATTTGATGGTACCAGATTTC
ATTGAAGCAGTTTTAAATGGTTTGTTATACGGAGGCTATTTAGCAATAGTTGTTGTACAA
ACAAACAGTTTTCCATTAAAATATTTTGATTATTTTATTGTCATCTTCGTATGTTCATTA
TTTTGTGGAGCAATACTTGGAACTATTTCTTTATATTGGCATAATGGACGATATTTCTCA
AAATTCACATTCTGCAACATATTTGTAATTTTCATGATTGAGTGCTGTTTTGAAAATGTG
ACTTCAATATATTTGCAAACTCTTCTATCTATTGTTTTATCAATATTTATGAGCTATATA
GATATGACATTTTCTGCATTTATTGGCACATTTGTATTGATACTTGATATATCTTTCTTA
ATTGAAATTGGAAATCTTCATAGAATCATCATCAATAATTTTGTTGCATATACAACAGTT
CCATCGCATATAGGCATGCCATTTTCATACTATATTAGACCAAATTTTATCAACTATAAA
GTACCATTAAATCTAATAGATTATGCATTCATTGTATTTTTCGTCATCTTTTCAATCTAT
TTGACGCTACGTAAACAAAAATATTTCATGACACATCCTTCAGTATTCGGAATTATTTTT
CCTCAAGCATCTGAAGTTAACACTTTCAATCTAGAAAATGCAAGAAGACGACATGAAAAT
TGTATAATGGCAGCACATCGCGAACTTGAAGAACATACGAGAAGAATATCAAGAAGTCGA
AGATTACATCGTTTTAACCCTCAAATACTTATAAATGGTAGAACACCAGCTCTTTCTTCT
CCCTGGTTAACATCAGAAGGAGATGATGATGTGTTCGAAACACCCCAAAGTGCACAATAT
TTACAAATACTGGCAGCAACACCTAGCAACAATACAATAGCAGATGATGAAATCGAACTT
GATATAGAAAATTCAGATTGTTAA
>g9562.t1 Gene=g9562 Length=607
MLLIYGLLVFLQFFKFSYQFTDKIVRIKITNATDDQNEMIFIDRIDLSARQSVIINVEKF
NNSHFDFATIQIHSYYQNLTIFDDDNEDIYYEAHIGFIINFNDSNSKTLKISNENHDTKH
ILVALIGYKDSSPTPGGCSVKKDKPNNINLYMTEETDNFLILSTPAASEAQHILCDDSDL
LYDTYYTYIDQLDFSIDSYFDALEKMIFTEIFSTYHVKNIVSSRKHMFEAVAGRGLIVNT
VVRNRKTGEMAFYLPFVTYSCPQNTWLAHCSNMSFLKRGIGIVLAIHSVVTMLNLMVPDF
IEAVLNGLLYGGYLAIVVVQTNSFPLKYFDYFIVIFVCSLFCGAILGTISLYWHNGRYFS
KFTFCNIFVIFMIECCFENVTSIYLQTLLSIVLSIFMSYIDMTFSAFIGTFVLILDISFL
IEIGNLHRIIINNFVAYTTVPSHIGMPFSYYIRPNFINYKVPLNLIDYAFIVFFVIFSIY
LTLRKQKYFMTHPSVFGIIFPQASEVNTFNLENARRRHENCIMAAHRELEEHTRRISRSR
RLHRFNPQILINGRTPALSSPWLTSEGDDDVFETPQSAQYLQILAATPSNNTIADDEIEL
DIENSDC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g9562.t1 | PANTHER | PTHR15937 | TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3 | 61 | 479 | 5.9E-21 |
| 20 | g9562.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 21 | g9562.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 22 | g9562.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 14 | - |
| 32 | g9562.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 19 | - |
| 19 | g9562.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 249 | - |
| 25 | g9562.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 250 | 267 | - |
| 10 | g9562.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 268 | 278 | - |
| 28 | g9562.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 279 | 297 | - |
| 18 | g9562.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 298 | 302 | - |
| 31 | g9562.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 303 | 319 | - |
| 11 | g9562.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 320 | 330 | - |
| 27 | g9562.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 331 | 352 | - |
| 17 | g9562.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 353 | 357 | - |
| 26 | g9562.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 358 | 376 | - |
| 13 | g9562.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 377 | 382 | - |
| 24 | g9562.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 383 | 400 | - |
| 15 | g9562.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 401 | 405 | - |
| 30 | g9562.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 406 | 427 | - |
| 14 | g9562.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 428 | 433 | - |
| 29 | g9562.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 434 | 453 | - |
| 16 | g9562.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 454 | 464 | - |
| 23 | g9562.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 465 | 483 | - |
| 12 | g9562.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 484 | 607 | - |
| 9 | g9562.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 6 | g9562.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 280 | 297 | - |
| 5 | g9562.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 321 | - |
| 8 | g9562.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 331 | 353 | - |
| 3 | g9562.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 365 | 387 | - |
| 7 | g9562.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 402 | 424 | - |
| 4 | g9562.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 429 | 451 | - |
| 2 | g9562.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 461 | 483 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
