General information for g9569.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome regulatory subunit 7.
Parent gene
- The parent gene g9569 is located on chr_1: 4075062..4075622 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9569 | g9569.t18 | TTS | g9569.t18 | 4074061 | 4074061 |
| chr_1 | g9569 | g9569.t18 | isoform | g9569.t18 | 4074881 | 4075622 |
| chr_1 | g9569 | g9569.t18 | exon | g9569.t18.exon1 | 4074881 | 4075251 |
| chr_1 | g9569 | g9569.t18 | cds | g9569.t18.CDS1 | 4074882 | 4075251 |
| chr_1 | g9569 | g9569.t18 | exon | g9569.t18.exon2 | 4075308 | 4075479 |
| chr_1 | g9569 | g9569.t18 | cds | g9569.t18.CDS2 | 4075308 | 4075479 |
| chr_1 | g9569 | g9569.t18 | exon | g9569.t18.exon3 | 4075547 | 4075622 |
| chr_1 | g9569 | g9569.t18 | cds | g9569.t18.CDS3 | 4075547 | 4075622 |
| chr_1 | g9569 | g9569.t18 | TSS | g9569.t18 | 4075709 | 4075709 |
Sequences
>g9569.t18 Gene=g9569 Length=619
ATGCCGGATCATTTAGGTGATGATATGCGTAAGGTGAAAGTGGACGATAAGGAAAAAGAT
GAGCCAGTAATAAAAGATCTCGATGAAGGAGATATTGAGCTTTTAAAGACTTATGGACAG
GGACAGTATCATAAAAGTATCAAACAAATTGAAGATGATATCCAAAAGGCAATTAAACAA
GTTAATGAACTCACTGGAATCAAAGAAAGTGACACTGGTCTTGCTCCTCCAGCTTTGTGG
GATTTAGCTGCTGATAAACAAACACTTCAGAATGAGCAACCATTACAAGTAGCTCGCTGT
ACAAAAATTATTAATGCGGATTCGGATGATCCTAAATATATCATCAATGTTAAGCAATTT
GCAAAATTTGTAGTTGATCTTGCTGACTCAGTTGCACCAACAGATATTGAAGAAGGAATG
CGTGTGGGTGTTGATAGAAATAAATATCAAATTCATATTCCATTGCCTCCGAAAATTGAT
CCAACTGTTACAATGATGCAAGTTGAAGATAAACCAGATGTCACTTACTCAGATGTTGGA
GGATGTAAAGAACAGATTGAGAAACTTAGAGAAGTTGTTGAAACACCTCTCTTGCATCCA
GAAAAGTTTGTCACACTCG
>g9569.t18 Gene=g9569 Length=206
MPDHLGDDMRKVKVDDKEKDEPVIKDLDEGDIELLKTYGQGQYHKSIKQIEDDIQKAIKQ
VNELTGIKESDTGLAPPALWDLAADKQTLQNEQPLQVARCTKIINADSDDPKYIINVKQF
AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVG
GCKEQIEKLREVVETPLLHPEKFVTL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9569.t18 | Coils | Coil | Coil | 47 | 67 | - |
| 4 | g9569.t18 | Gene3D | G3DSA:2.40.50.140 | - | 40 | 166 | 1.9E-25 |
| 3 | g9569.t18 | Gene3D | G3DSA:3.40.50.300 | - | 167 | 206 | 2.9E-5 |
| 1 | g9569.t18 | PANTHER | PTHR23073 | 26S PROTEASOME REGULATORY SUBUNIT | 18 | 206 | 8.1E-94 |
| 2 | g9569.t18 | PANTHER | PTHR23073:SF13 | 26S PROTEASOME REGULATORY SUBUNIT 7 | 18 | 206 | 8.1E-94 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0036402 | proteasome-activating activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
