Gene loci information

Transcript annotation

  • This transcript has been annotated as 26S proteasome regulatory subunit 7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9569 g9569.t7 TTS g9569.t7 4074061 4074061
chr_1 g9569 g9569.t7 isoform g9569.t7 4074131 4075622
chr_1 g9569 g9569.t7 exon g9569.t7.exon1 4074131 4074766
chr_1 g9569 g9569.t7 cds g9569.t7.CDS1 4074732 4074766
chr_1 g9569 g9569.t7 exon g9569.t7.exon2 4074824 4075251
chr_1 g9569 g9569.t7 cds g9569.t7.CDS2 4074824 4075251
chr_1 g9569 g9569.t7 exon g9569.t7.exon3 4075308 4075479
chr_1 g9569 g9569.t7 cds g9569.t7.CDS3 4075308 4075479
chr_1 g9569 g9569.t7 exon g9569.t7.exon4 4075547 4075622
chr_1 g9569 g9569.t7 cds g9569.t7.CDS4 4075547 4075622
chr_1 g9569 g9569.t7 TSS g9569.t7 4075709 4075709

Sequences

>g9569.t7 Gene=g9569 Length=1312
ATGCCGGATCATTTAGGTGATGATATGCGTAAGGTGAAAGTGGACGATAAGGAAAAAGAT
GAGCCAGTAATAAAAGATCTCGATGAAGGAGATATTGAGCTTTTAAAGACTTATGGACAG
GGACAGTATCATAAAAGTATCAAACAAATTGAAGATGATATCCAAAAGGCAATTAAACAA
GTTAATGAACTCACTGGAATCAAAGAAAGTGACACTGGTCTTGCTCCTCCAGCTTTGTGG
GATTTAGCTGCTGATAAACAAACACTTCAGAATGAGCAACCATTACAAGTAGCTCGCTGT
ACAAAAATTATTAATGCGGATTCGGATGATCCTAAATATATCATCAATGTTAAGCAATTT
GCAAAATTTGTAGTTGATCTTGCTGACTCAGTTGCACCAACAGATATTGAAGAAGGAATG
CGTGTGGGTGTTGATAGAAATAAATATCAAATTCATATTCCATTGCCTCCGAAAATTGAT
CCAACTGTTACAATGATGCAAGTTGAAGATAAACCAGATGTCACTTACTCAGATGTTGGA
GGATGTAAAGAACAGATTGAGAAACTTAGAGAAGTTGTTGAAACACCTCTCTTGCATCCA
GAAAAGTTTGTCACACTCGGTATTGAACCACCAAAAGGCGTGCTTCTTTTTGGACCACCT
GGAACTGGCAAGGTTTACACTATGTGCAAGAGCAGTTGCAAATCGTACTGATGCTTGTTT
TATTCGTGTAATTGGATCTGAGTTGGTTCAGAAATATGTCGGTGAAGGAGCGAGAATGGT
TCGCGAATTATTTGAAATGGCACGCAGTAAAAAAGCTTGTCTCATCTTTTTCGATGAAAT
TGATGCTATTGGTGGTGCACGTTTTGACGATGGTGCAGGAGGAGATAATGAAGTTCAAAG
AACTATGTTGGAACTTATTAATCAACTTGATGGTTTTGATCCTCGTGGTAATATCAAAGT
TTTGATGGCTACAAATCGTCCTGATACTTTAGATCCTGCATTAATGCGTCCTGGTCGTCT
CGATAGAAAAGTTGAATTTGGCTTACCTGACCTCGAAGGAAGAGCTCACATTTTTAAAAT
TCATGCTCGTTCAATGTCTGTTGAGCGTGATATTCGCTTTGAATTGCTTGCTCGATTATG
TCCTAATTCAACTGGTGCTGAAATTCGATCAGTTTGCACAGAAGCTGGCATGTTTGCTAT
TCGTGCACGACGTAAAGTTGCAACAGAGAAAGATTTCCTTGAAGCTGTGAACAAAGTCAT
CAAGAGCTACGCCAAATTCTCAGCTACTCCACGTTACATGACTTACAATTAA

>g9569.t7 Gene=g9569 Length=236
MPDHLGDDMRKVKVDDKEKDEPVIKDLDEGDIELLKTYGQGQYHKSIKQIEDDIQKAIKQ
VNELTGIKESDTGLAPPALWDLAADKQTLQNEQPLQVARCTKIINADSDDPKYIINVKQF
AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEDKPDVTYSDVG
GCKEQIEKLREVVETPLLHPEKFVTLGIEPPKGVLLFGPPGTGKVYTMCKSSCKSY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g9569.t7 CDD cd00009 AAA 180 224 5.31114E-4
6 g9569.t7 Coils Coil Coil 47 67 -
5 g9569.t7 Gene3D G3DSA:2.40.50.140 - 40 166 2.7E-25
4 g9569.t7 Gene3D G3DSA:3.40.50.300 - 167 234 6.8E-18
1 g9569.t7 PANTHER PTHR23073 26S PROTEASOME REGULATORY SUBUNIT 18 226 2.3E-108
2 g9569.t7 PANTHER PTHR23073:SF13 26S PROTEASOME REGULATORY SUBUNIT 7 18 226 2.3E-108
3 g9569.t7 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 160 224 1.73E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0036402 proteasome-activating activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed