General information for g9574.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Facilitated trehalose transporter Tret1.
Parent gene
- The parent gene g9574 is located on chr_1: 4105802..4107263 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9574 | g9574.t1 | TTS | g9574.t1 | 4104925 | 4104925 |
| chr_1 | g9574 | g9574.t1 | isoform | g9574.t1 | 4105802 | 4107263 |
| chr_1 | g9574 | g9574.t1 | exon | g9574.t1.exon1 | 4105802 | 4106839 |
| chr_1 | g9574 | g9574.t1 | cds | g9574.t1.CDS1 | 4105802 | 4106839 |
| chr_1 | g9574 | g9574.t1 | exon | g9574.t1.exon2 | 4106897 | 4107165 |
| chr_1 | g9574 | g9574.t1 | cds | g9574.t1.CDS2 | 4106897 | 4107165 |
| chr_1 | g9574 | g9574.t1 | exon | g9574.t1.exon3 | 4107218 | 4107263 |
| chr_1 | g9574 | g9574.t1 | cds | g9574.t1.CDS3 | 4107218 | 4107263 |
| chr_1 | g9574 | g9574.t1 | TSS | g9574.t1 | NA | NA |
Sequences
>g9574.t1 Gene=g9574 Length=1353
ATGAGAAATTATAAAATTTCCACTCAAATTTTAGTAACTTTGACTGCTAATGTGGGTGCG
ATTGCTTTTGGAATGATGCTTGGTTGGAGTGGTGTAACAGTTGATGACATAGTGGACAAT
GATGAATTTTATTTTCCTGTCTCAGCATATGAATTTAGCTGGATTGTTGCACTGATGCCA
CTTGGGGCTGCTTTTTCTGTCTCCTTTTCTGGATTAATGAGAGATAAATTAGGAACAAGA
TTAACAATCTTTCTTTTTGTAATTCCTATCACTATTGGTTATACTTTAATCACTCTTCCA
TTGAATATTGAAATGTTGCTTGCCGGAAGATTTCTTATTGGAATAACTGCGGGTTGTTAT
GTTTTTGTGCCAATCTTTTATGTTGGAGAAATTGCAAGCATTGAAATTCGAGGAGCATTA
TTGGCATTCTTCTTTTTCATGGTGAATTTTGGAGTTTTGGTGATTTTTATTATTGGACAT
TTTGCAAGTTTAATTGCTGTAAATGCAACATGTGGAATAGTGCCAATTCTATATTCAATT
GCATTCATATTTTTACGTGAATCACCAGCAATGTTGATTTATAAAAATAGAATCGAAGAA
GCAAAAGAGTGCATTTTATTTTTGAGAGGTGCTACATATAATTATCAAGCTGAAATTGAT
GATTTAAAGATACGAATTCAAACTTTTCAAGATCGCATTGGATTTAGAAAAATTTTTACC
ACAAAATCAACTCGAAAAGCACTCTTTCTTATTATGGGCATGTTTTTCTTCTTTCAAATG
AGTGGAATTAACATTTTACCATTCTATGCAACTATGATTTTCTCAGAAGCTGGTTTTGAA
TTTTTAGCTGGTATTTCAAGCATCGTTGTGGCAAGCATGCAAGTCATCAGCTGTATCTAT
TCAGTAGTTTGTGTTGATCGATTTGGACGACGACCATTATTAATTTCATCAACGGCTGTA
ATGTCTTTGTGTCTTATGGGAATTGGCACTTATTTCTTTTTGAAAGAAAATTCAATTGAT
ATGAGCAAATTTATGTACATGCCTTTGACACTTTTCTGTATTTTTGTAGTTGCATTTAGC
ATTGGTTTAGCACCTGTGACTTATGTTTTACTGGGCGAATTTTTTTTATTTGAAGCAAAA
ATTTACGTTGCACCCCTAACAAAAGTTGTCAACTTTTCACTTGCATTTATGATCGCTTTG
ACTTTTGTTTTATTGGTATCAAGTGTAGGATTTGGAATAACATTTTATATTTTTGCAACT
TTCAACTTTTTGGGATGCATTTTTTCATTTCTTTTTATACCTGAAACCAAAGGTACAACA
TTGGCTGAAATACAAACTATTTTGGGAATGTAA
>g9574.t1 Gene=g9574 Length=450
MRNYKISTQILVTLTANVGAIAFGMMLGWSGVTVDDIVDNDEFYFPVSAYEFSWIVALMP
LGAAFSVSFSGLMRDKLGTRLTIFLFVIPITIGYTLITLPLNIEMLLAGRFLIGITAGCY
VFVPIFYVGEIASIEIRGALLAFFFFMVNFGVLVIFIIGHFASLIAVNATCGIVPILYSI
AFIFLRESPAMLIYKNRIEEAKECILFLRGATYNYQAEIDDLKIRIQTFQDRIGFRKIFT
TKSTRKALFLIMGMFFFFQMSGINILPFYATMIFSEAGFEFLAGISSIVVASMQVISCIY
SVVCVDRFGRRPLLISSTAVMSLCLMGIGTYFFLKENSIDMSKFMYMPLTLFCIFVVAFS
IGLAPVTYVLLGEFFLFEAKIYVAPLTKVVNFSLAFMIALTFVLLVSSVGFGITFYIFAT
FNFLGCIFSFLFIPETKGTTLAEIQTILGM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9574.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 6 | 449 | 7.0E-82 |
| 2 | g9574.t1 | PANTHER | PTHR48021:SF63 | GH07001P-RELATED | 8 | 447 | 5.9E-107 |
| 3 | g9574.t1 | PANTHER | PTHR48021 | - | 8 | 447 | 5.9E-107 |
| 6 | g9574.t1 | PRINTS | PR00171 | Sugar transporter signature | 107 | 126 | 1.3E-5 |
| 5 | g9574.t1 | PRINTS | PR00171 | Sugar transporter signature | 258 | 268 | 1.3E-5 |
| 4 | g9574.t1 | PRINTS | PR00171 | Sugar transporter signature | 349 | 370 | 1.3E-5 |
| 1 | g9574.t1 | Pfam | PF00083 | Sugar (and other) transporter | 13 | 447 | 3.0E-63 |
| 10 | g9574.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 28 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 32 | - |
| 17 | g9574.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 33 | 51 | - |
| 31 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 52 | 69 | - |
| 15 | g9574.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 70 | 80 | - |
| 26 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 81 | 101 | - |
| 16 | g9574.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 102 | 106 | - |
| 29 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 107 | 128 | - |
| 13 | g9574.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 129 | 139 | - |
| 30 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 140 | 159 | - |
| 19 | g9574.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 160 | 164 | - |
| 32 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 185 | - |
| 14 | g9574.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 186 | 246 | - |
| 33 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 269 | - |
| 21 | g9574.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 270 | 280 | - |
| 22 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 281 | 305 | - |
| 12 | g9574.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 306 | 311 | - |
| 27 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 312 | 334 | - |
| 20 | g9574.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 335 | 345 | - |
| 25 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 346 | 377 | - |
| 11 | g9574.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 378 | 388 | - |
| 23 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 389 | 407 | - |
| 18 | g9574.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 408 | 412 | - |
| 24 | g9574.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 413 | 433 | - |
| 9 | g9574.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 434 | 450 | - |
| 46 | g9574.t1 | ProSitePatterns | PS00217 | Sugar transport proteins signature 2. | 112 | 137 | - |
| 47 | g9574.t1 | ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 301 | 318 | - |
| 48 | g9574.t1 | ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 12 | 437 | 28.945 |
| 7 | g9574.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 8 | 444 | 1.44E-40 |
| 39 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 32 | - |
| 42 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 69 | - |
| 35 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 81 | 103 | - |
| 37 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 107 | 129 | - |
| 36 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 136 | 158 | - |
| 45 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 44 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 246 | 268 | - |
| 34 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 283 | 305 | - |
| 41 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 312 | 334 | - |
| 40 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 354 | 376 | - |
| 38 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 389 | 406 | - |
| 43 | g9574.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 411 | 433 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed