Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g958 g958.t1 isoform g958.t1 7040488 7041650
chr_3 g958 g958.t1 exon g958.t1.exon1 7040488 7040520
chr_3 g958 g958.t1 cds g958.t1.CDS1 7040488 7040520
chr_3 g958 g958.t1 exon g958.t1.exon2 7040603 7041502
chr_3 g958 g958.t1 cds g958.t1.CDS2 7040603 7041502
chr_3 g958 g958.t1 exon g958.t1.exon3 7041630 7041650
chr_3 g958 g958.t1 cds g958.t1.CDS3 7041630 7041650
chr_3 g958 g958.t1 TSS g958.t1 7041641 7041641
chr_3 g958 g958.t1 TTS g958.t1 NA NA

Sequences

>g958.t1 Gene=g958 Length=954
ATGATTGAATTTGAATTAAATTGTCGAATTTTTTTGAATTTCATATTGAATTTTAGGAAT
ACCAACAAATATTGTTTTAAAAATCTTAGTCGCGTAGATTGGGATATTTTTCAATTATCT
GATCATCATGGAATCGCTCTTAGAACTCGAGCAATATCTGGATATAGCGAAAAAGATTTA
TTTATAGAAAGTTTACCACCGATACCAATAAGAACAGTAAAACATTTGAGTGAACCTGAA
AATTTTATTCAACGTGAAAAATTAGAAACTGATAAGTATATACAAACTAGATTAGAATCA
AGAATTAAAGTCGCATTCAGAGCTAAGAAAGTATTCAATGAGGCTCAGAACATCAATGGA
GATATTTTGGAATATATTGGAAATAAAATGCTTAAAAAAACATCGTATTACAACACTACA
GATACATTCGATCTAAATTGCAATAAAGGAACGCTAAATTATATTGAAGGAGACGAGTAT
GAATCTCTTGCATATGTCTGGGATTCATCATCAATTGATTTTTTTCGACTGCAAAATAAT
GATTTAATTAAAATATACTCAACTCAAACAGTTCCTGGACGCATGCCAAATGAGCTGATA
ACAGATTCCAAATCAAAATTTGCTCTCGTACGTTATCCGCTTCATATTCATCTTTTTGAA
GCTCCTAATTATGATAAACTTCCAAAAAAATTATCTATAAAACCTATCGACTCTATAAGA
TACAAAACAGAAATTGTTGCTTCTTCACTTCAAGATAAATATTTAACAACAGTTAATACA
AAGCATCGATTAAGTAGATTCGATCTAGAACATAAATTTAAACATTTCTCAATCAAACTC
AATAACTATTTTGTTGGTCCTATTTCGCCTATTTCTGTTTCCGATCATATTAAAGCAAAC
AATAGGGATAATTTTATCACGATACTATGCTATTTGCTTGCGAAAGAATCATGA

>g958.t1 Gene=g958 Length=317
MIEFELNCRIFLNFILNFRNTNKYCFKNLSRVDWDIFQLSDHHGIALRTRAISGYSEKDL
FIESLPPIPIRTVKHLSEPENFIQREKLETDKYIQTRLESRIKVAFRAKKVFNEAQNING
DILEYIGNKMLKKTSYYNTTDTFDLNCNKGTLNYIEGDEYESLAYVWDSSSIDFFRLQNN
DLIKIYSTQTVPGRMPNELITDSKSKFALVRYPLHIHLFEAPNYDKLPKKLSIKPIDSIR
YKTEIVASSLQDKYLTTVNTKHRLSRFDLEHKFKHFSIKLNNYFVGPISPISVSDHIKAN
NRDNFITILCYLLAKES

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed