General information for g958.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g958 is located on chr_3: 7041650..7062065 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g958 | g958.t3 | TTS | g958.t3 | 7039191 | 7039191 |
| chr_3 | g958 | g958.t3 | isoform | g958.t3 | 7039451 | 7042494 |
| chr_3 | g958 | g958.t3 | exon | g958.t3.exon1 | 7039451 | 7041467 |
| chr_3 | g958 | g958.t3 | cds | g958.t3.CDS1 | 7039451 | 7041467 |
| chr_3 | g958 | g958.t3 | exon | g958.t3.exon2 | 7042484 | 7042494 |
| chr_3 | g958 | g958.t3 | cds | g958.t3.CDS2 | 7042484 | 7042494 |
| chr_3 | g958 | g958.t3 | TSS | g958.t3 | NA | NA |
Sequences
>g958.t3 Gene=g958 Length=2028
ATGTTTTTTTGGAATACCAACAAATATTGTTTTAAAAATCTTAGTCGCGTAGATTGGGAT
ATTTTTCAATTATCTGATCATCATGGAATCGCTCTTAGAACTCGAGCAATATCTGGATAT
AGCGAAAAAGATTTATTTATAGAAAGTTTACCACCGATACCAATAAGAACAGTAAAACAT
TTGAGTGAACCTGAAAATTTTATTCAACGTGAAAAATTAGAAACTGATAAGTATATACAA
ACTAGATTAGAATCAAGAATTAAAGTCGCATTCAGAGCTAAGAAAGTATTCAATGAGGCT
CAGAACATCAATGGAGATATTTTGGAATATATTGGAAATAAAATGCTTAAAAAAACATCG
TATTACAACACTACAGATACATTCGATCTAAATTGCAATAAAGGAACGCTAAATTATATT
GAAGGAGACGAGTATGAATCTCTTGCATATGTCTGGGATTCATCATCAATTGATTTTTTT
CGACTGCAAAATAATGATTTAATTAAAATATACTCAACTCAAACAGTTCCTGGACGCATG
CCAAATGAGCTGATAACAGATTCCAAATCAAAATTTGCTCTCGTACGTTATCCGCTTCAT
ATTCATCTTTTTGAAGCTCCTAATTATGATAAACTTCCAAAAAAATTATCTATAAAACCT
ATCGACTCTATAAGATACAAAACAGAAATTGTTGCTTCTTCACTTCAAGATAAATATTTA
ACAACAGTTAATACAAAGCATCGATTAAGTAGATTCGATCTAGAACATAAATTTAAACAT
TTCTCAATCAAACTCAATAACTATTTTGTTGGTCCTATTTCGCCTATTTCTGTTTCCGAT
CATATTAAAGCAAACAATAGGGATAATTTTATCACGGTGACTACGAGACAGAGCTATAGC
CTCTTTGATTGTCGAGTAAAGAAAAAATACTGCATGACCAAACTTTTCACTCATAAAGAT
ACTATGCTATTTGCTTGCGAAAGAATCATGAATCATACTCAATCACTTTTGGATAAAAAT
ATAGTTTATATCTCATCATCACACTTATTATACGCATTCGATCATCGTAATTTGAAAGAA
CCAGTTGTACATTGGACACATGGACTCATAAAACCAGCTCTCATGCTAAAAACTCAATTA
TATGGCACAAAAGAAGTTATTTGTGTATCAAGTCATAAACCGGATGATTTTGCGTTATTC
AATTATAGCGCAGAGTATATTAATTACAATCCTTTCAAACCAATAGGTCTTGAAAATGTT
TACAACAAATTTAGGGAAGAAGGTCAATTTTTGTTATCTGATACAATTCCTGAACGAATT
AAAGCAAATAATACTGGTATTGCTCTTCAATGTGATCCAATAAGTCGAGTTGTTAATGTT
TTTACACAAAATTTTTATGGTGATATATTCAAATATGAAGTGAAATGTCAACAAAAAAGT
AGTAGAAATCATGAGGTAAATTATCAAGCATTGTCCGAGAGATATCAAAATTTAGACAAC
TTTCTTAGCGAAAAACGTAATCCTAACAAGTATATGAGTGATGATGACCGAATAAATCAT
GGAAGAATGTGTATTGATGATATAATCAGACTTGATGGAATTTCAAAAATTTTAACTGGT
GAAAAAATACCAATAATAGAAGCAGATATCGACATGCTTGAGCCTGAGAAAGTTTCAAAC
CCTAAACCATCATGGAAAATTAATATTCACGATGCGAGACAATATCAAGATTTACTAGCT
ACTGAAATAATGCAAGTTTGGGATGATATTGAAATGGAAGAAATGAGACCAGATGTTTTT
GCTGCAGCAATTGATGCATCACAAAATGACCAAGGCAAAGAAATGGACAAAGTTTCAATG
TGGCTTAAAAATAATATATCAACACATAATTCAATAGTAAATGATTCGATAGATTTATTA
GATAGCACTGTTCTTACTCAAGATTTGCCAACGCAAGCAACAGGTGCTTCAACTTCAACA
CCTGCTCTTCGTTCTGCAAGAAAGAAACCTAGACTTGCTGGATTCTAA
>g958.t3 Gene=g958 Length=675
MFFWNTNKYCFKNLSRVDWDIFQLSDHHGIALRTRAISGYSEKDLFIESLPPIPIRTVKH
LSEPENFIQREKLETDKYIQTRLESRIKVAFRAKKVFNEAQNINGDILEYIGNKMLKKTS
YYNTTDTFDLNCNKGTLNYIEGDEYESLAYVWDSSSIDFFRLQNNDLIKIYSTQTVPGRM
PNELITDSKSKFALVRYPLHIHLFEAPNYDKLPKKLSIKPIDSIRYKTEIVASSLQDKYL
TTVNTKHRLSRFDLEHKFKHFSIKLNNYFVGPISPISVSDHIKANNRDNFITVTTRQSYS
LFDCRVKKKYCMTKLFTHKDTMLFACERIMNHTQSLLDKNIVYISSSHLLYAFDHRNLKE
PVVHWTHGLIKPALMLKTQLYGTKEVICVSSHKPDDFALFNYSAEYINYNPFKPIGLENV
YNKFREEGQFLLSDTIPERIKANNTGIALQCDPISRVVNVFTQNFYGDIFKYEVKCQQKS
SRNHEVNYQALSERYQNLDNFLSEKRNPNKYMSDDDRINHGRMCIDDIIRLDGISKILTG
EKIPIIEADIDMLEPEKVSNPKPSWKINIHDARQYQDLLATEIMQVWDDIEMEEMRPDVF
AAAIDASQNDQGKEMDKVSMWLKNNISTHNSIVNDSIDLLDSTVLTQDLPTQATGASTST
PALRSARKKPRLAGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g958.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 675 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
