General information for g9594.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Acetyl-CoA acetyltransferase.
Parent gene
- The parent gene g9594 is located on chr_1: 4187512..4189260 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9594 | g9594.t2 | TTS | g9594.t2 | 4187322 | 4187322 |
| chr_1 | g9594 | g9594.t2 | isoform | g9594.t2 | 4187329 | 4188635 |
| chr_1 | g9594 | g9594.t2 | exon | g9594.t2.exon1 | 4187329 | 4188635 |
| chr_1 | g9594 | g9594.t2 | cds | g9594.t2.CDS1 | 4187512 | 4188432 |
| chr_1 | g9594 | g9594.t2 | TSS | g9594.t2 | 4189274 | 4189274 |
Sequences
>g9594.t2 Gene=g9594 Length=1307
AAGGTGCATTCAATAATCTTCCAGCACATGATTTAGGCGCTGTCGTTATTAAAGAAGTAG
TTCAACGTGCAAGTTTATCACCATCAGATGTAAATGAAGTTATTTTAGGACAGGCACTTC
AAGCAGCTGCTGGTCAAAATCCCGCAAGACAGGCATCACTCAAAGCTGGTTTGCCAAATG
ATATTCCTGCTTATGGAATCAATATGCTTTGTGGTTCTGGTTTAAAATCAGTAGCACTTG
GTTTTCAAGCAATTCGCAATGGTGACTCGAATATTGTTGTTTGTGGAGGACAAGAAAGCA
TGACACGTGCACCGCATGCAATACATTTAAGAAGTGGTACAAAAATGGGTACTGCATCTA
TGGTTGACACAATGATTCAAGATGGTCTAACAGATGCAATGCATTCCATTCATATGGGAG
AAACTGCTGAGAATCTCGCAAAAGAATTCTCAGTCACAAGACAAGAGCAAGATGCATTTG
CAGCCAAATCTCAACAACTCGCTGATACAGCTCAAAAATCAGGCTGGTTTGATGAGGAAA
TTGTGCCTGTTGTTGTTGCTGGCCGTAAAGAATCAGTTACTATTTCAAAAGATGAATATT
TGAAACCTGGAACTAGTGTTGAAGGATTATCAAAATTAAGAGCATGCTTCATCAAAGATG
GAACTGTAACGCCAGGAAATGCTTCAGGTGTCAATGATTCTGCAGCTGCAGTTTTATTAG
CTTCAGCTGATGAAGTAACTAAAAGAAATCTCAAACCATTAGCAAAAATTGTTGCATTTA
GTCAAGTTGGATGTGATCCAAAAATTATGGGTATTGGACCGAAATATGCAGTTCCCGAAG
TTATAAAAAAAGCAGGTTGGACTCTCGATGAAGTAGATTTATTTGAGTTAAATGAAGCAT
TTGCAGCACAAGCAATTTCAGTAAATCGTGGATTGAATATTAATGAAGCAAAAGTTAATA
TAAATGGTGGAGCAATTGCACTTGGTCATCCGATCGGTGCTAGTGGTGCTCGAGTTTTAG
TGACATTAATTTATGCTCTCAAACGTATTGGAAAGAAACGTGGAGTAGCGAGTTTATGCG
TTGGTGGTGGAATGGGAGTTGCGATGGCAATAGAAATGGTTTAAACTAAAGGAAATTAAA
AGTACTTACTTAATTATAATTTGGGCTCGTGGTGCTAGTTACATTCTTAAATCTTAACAA
CTTATTGCGAAGCATAGAAAAATCTCTTATAATGTTATATCATCTGTAATTTTATGCAAG
GTTGACAATACACATTTGGTACTTTTTATAAAATAAAAATTTTATTT
>g9594.t2 Gene=g9594 Length=306
MLCGSGLKSVALGFQAIRNGDSNIVVCGGQESMTRAPHAIHLRSGTKMGTASMVDTMIQD
GLTDAMHSIHMGETAENLAKEFSVTRQEQDAFAAKSQQLADTAQKSGWFDEEIVPVVVAG
RKESVTISKDEYLKPGTSVEGLSKLRACFIKDGTVTPGNASGVNDSAAAVLLASADEVTK
RNLKPLAKIVAFSQVGCDPKIMGIGPKYAVPEVIKKAGWTLDEVDLFELNEAFAAQAISV
NRGLNINEAKVNINGGAIALGHPIGASGARVLVTLIYALKRIGKKRGVASLCVGGGMGVA
MAIEMV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g9594.t2 | CDD | cd00751 | thiolase | 1 | 304 | 1.04253E-153 |
| 9 | g9594.t2 | Gene3D | G3DSA:3.40.47.10 | - | 1 | 306 | 5.9E-112 |
| 3 | g9594.t2 | PANTHER | PTHR18919:SF144 | ACETYL-COA ACETYLTRANSFERASE | 1 | 305 | 1.1E-120 |
| 4 | g9594.t2 | PANTHER | PTHR18919 | ACETYL-COA C-ACYLTRANSFERASE | 1 | 305 | 1.1E-120 |
| 2 | g9594.t2 | Pfam | PF00108 | Thiolase, N-terminal domain | 2 | 175 | 5.2E-64 |
| 1 | g9594.t2 | Pfam | PF02803 | Thiolase, C-terminal domain | 183 | 304 | 9.3E-51 |
| 8 | g9594.t2 | ProSitePatterns | PS00737 | Thiolases signature 2. | 252 | 268 | - |
| 7 | g9594.t2 | ProSitePatterns | PS00099 | Thiolases active site. | 287 | 300 | - |
| 5 | g9594.t2 | SUPERFAMILY | SSF53901 | Thiolase-like | 2 | 180 | 4.66E-53 |
| 6 | g9594.t2 | SUPERFAMILY | SSF53901 | Thiolase-like | 184 | 305 | 9.46E-43 |
| 10 | g9594.t2 | TIGRFAM | TIGR01930 | AcCoA-C-Actrans: acetyl-CoA C-acyltransferase | 1 | 304 | 4.7E-111 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
