General information for g9606.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein dj-1beta.
Parent gene
- The parent gene g9606 is located on chr_1: 4261782..4264089 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9606 | g9606.t1 | TSS | g9606.t1 | 4260933 | 4260933 |
| chr_1 | g9606 | g9606.t1 | isoform | g9606.t1 | 4261001 | 4261782 |
| chr_1 | g9606 | g9606.t1 | exon | g9606.t1.exon1 | 4261001 | 4261084 |
| chr_1 | g9606 | g9606.t1 | cds | g9606.t1.CDS1 | 4261001 | 4261084 |
| chr_1 | g9606 | g9606.t1 | exon | g9606.t1.exon2 | 4261309 | 4261782 |
| chr_1 | g9606 | g9606.t1 | cds | g9606.t1.CDS2 | 4261309 | 4261782 |
| chr_1 | g9606 | g9606.t1 | TTS | g9606.t1 | 4261858 | 4261858 |
Sequences
>g9606.t1 Gene=g9606 Length=558
ATGGCCACTGCATTAGCAATTTTACCAGCTGGAGCTGAAGAAATTGAATTTGTTGCATCA
GTTGATGTTTTACGACGTGCTGGTGTAACTGTAACAGTCGCAGGTTTAGATGGCAAAGAT
CCAGTAAAATGTTCGCGTGATGTTATGGTTGTTCCTGAGGTCGCATTATCTGATGTTGCA
AACAATAAATCATTCGATGCTATCGTTCTACCAGGGGGTTTAGGTGGAGCGAAAGCTTTA
GCTGAATCATCTTTAATTAAAGAGCTATTGAAGAAACAAGAGCAAAAAAATAAAATTATT
GCAGCTATCTGTGCATCACCAGCTCTCGTCTTTAAGGCACACAATATTGCTGTTAACAAA
AAAATCACCTGCTATCCCAGTTTCCAAAAAGATTTAGGTTCGGATTACACATTTGTCGAT
GAAGTAGTTGTTCAAGATGGAAAAATCATCACTTCTCAAGGTCCATCTACAGTTTTCAAG
TTTGCTCTTAAGATCGCTGAGAATTTAGTCGGAGAAGAAAAAGCTGCAGCTGTCGCTCAA
GGCATTTTATTGAAATAA
>g9606.t1 Gene=g9606 Length=185
MATALAILPAGAEEIEFVASVDVLRRAGVTVTVAGLDGKDPVKCSRDVMVVPEVALSDVA
NNKSFDAIVLPGGLGGAKALAESSLIKELLKKQEQKNKIIAAICASPALVFKAHNIAVNK
KITCYPSFQKDLGSDYTFVDEVVVQDGKIITSQGPSTVFKFALKIAENLVGEEKAAAVAQ
GILLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g9606.t1 | CDD | cd03135 | GATase1_DJ-1 | 4 | 169 | 4.00874E-61 |
| 5 | g9606.t1 | Gene3D | G3DSA:3.40.50.880 | - | 2 | 185 | 2.8E-52 |
| 2 | g9606.t1 | PANTHER | PTHR48094:SF12 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1 | 3 | 183 | 1.1E-60 |
| 3 | g9606.t1 | PANTHER | PTHR48094 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED | 3 | 183 | 1.1E-60 |
| 1 | g9606.t1 | Pfam | PF01965 | DJ-1/PfpI family | 4 | 167 | 4.7E-45 |
| 8 | g9606.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 12 | - |
| 9 | g9606.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 10 | g9606.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 8 | - |
| 11 | g9606.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 9 | 12 | - |
| 7 | g9606.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 13 | 185 | - |
| 4 | g9606.t1 | SUPERFAMILY | SSF52317 | Class I glutamine amidotransferase-like | 1 | 183 | 1.9E-46 |
| 6 | g9606.t1 | TIGRFAM | TIGR01383 | not_thiJ: DJ-1 family protein | 5 | 180 | 1.6E-63 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05687 (protein DJ-1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
