Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein dj-1beta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9606 g9606.t5 isoform g9606.t5 4260468 4261782
chr_1 g9606 g9606.t5 exon g9606.t5.exon1 4260468 4260470
chr_1 g9606 g9606.t5 exon g9606.t5.exon2 4260932 4261084
chr_1 g9606 g9606.t5 cds g9606.t5.CDS1 4260932 4261084
chr_1 g9606 g9606.t5 exon g9606.t5.exon3 4261309 4261782
chr_1 g9606 g9606.t5 cds g9606.t5.CDS2 4261309 4261782
chr_1 g9606 g9606.t5 TTS g9606.t5 4261858 4261858
chr_1 g9606 g9606.t5 TSS g9606.t5 NA NA

Sequences

>g9606.t5 Gene=g9606 Length=630
CCTATGTTTTCTTTTTCTGGAAGATTTGTAAAGCCGCATCAATTTTTGCGAAAAATCAAT
TTATTAAGAAATATGGCCACTGCATTAGCAATTTTACCAGCTGGAGCTGAAGAAATTGAA
TTTGTTGCATCAGTTGATGTTTTACGACGTGCTGGTGTAACTGTAACAGTCGCAGGTTTA
GATGGCAAAGATCCAGTAAAATGTTCGCGTGATGTTATGGTTGTTCCTGAGGTCGCATTA
TCTGATGTTGCAAACAATAAATCATTCGATGCTATCGTTCTACCAGGGGGTTTAGGTGGA
GCGAAAGCTTTAGCTGAATCATCTTTAATTAAAGAGCTATTGAAGAAACAAGAGCAAAAA
AATAAAATTATTGCAGCTATCTGTGCATCACCAGCTCTCGTCTTTAAGGCACACAATATT
GCTGTTAACAAAAAAATCACCTGCTATCCCAGTTTCCAAAAAGATTTAGGTTCGGATTAC
ACATTTGTCGATGAAGTAGTTGTTCAAGATGGAAAAATCATCACTTCTCAAGGTCCATCT
ACAGTTTTCAAGTTTGCTCTTAAGATCGCTGAGAATTTAGTCGGAGAAGAAAAAGCTGCA
GCTGTCGCTCAAGGCATTTTATTGAAATAA

>g9606.t5 Gene=g9606 Length=208
MFSFSGRFVKPHQFLRKINLLRNMATALAILPAGAEEIEFVASVDVLRRAGVTVTVAGLD
GKDPVKCSRDVMVVPEVALSDVANNKSFDAIVLPGGLGGAKALAESSLIKELLKKQEQKN
KIIAAICASPALVFKAHNIAVNKKITCYPSFQKDLGSDYTFVDEVVVQDGKIITSQGPST
VFKFALKIAENLVGEEKAAAVAQGILLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9606.t5 CDD cd03135 GATase1_DJ-1 27 192 2.10155E-62
5 g9606.t5 Gene3D G3DSA:3.40.50.880 - 21 208 2.3E-52
2 g9606.t5 PANTHER PTHR48094:SF12 PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1 25 206 1.2E-60
3 g9606.t5 PANTHER PTHR48094 PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 25 206 1.2E-60
1 g9606.t5 Pfam PF01965 DJ-1/PfpI family 27 190 7.1E-45
8 g9606.t5 Phobius SIGNAL_PEPTIDE Signal peptide region 1 35 -
9 g9606.t5 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 23 -
10 g9606.t5 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 24 31 -
11 g9606.t5 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 32 35 -
7 g9606.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 36 208 -
4 g9606.t5 SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like 24 206 3.0E-46
6 g9606.t5 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 28 203 2.5E-63

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values