General information for g9606.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein dj-1beta.
Parent gene
- The parent gene g9606 is located on chr_1: 4261782..4264089 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9606 | g9606.t9 | TSS | g9606.t9 | 4260933 | 4260933 |
| chr_1 | g9606 | g9606.t9 | isoform | g9606.t9 | 4261001 | 4261782 |
| chr_1 | g9606 | g9606.t9 | exon | g9606.t9.exon1 | 4261001 | 4261082 |
| chr_1 | g9606 | g9606.t9 | cds | g9606.t9.CDS1 | 4261065 | 4261082 |
| chr_1 | g9606 | g9606.t9 | exon | g9606.t9.exon2 | 4261309 | 4261447 |
| chr_1 | g9606 | g9606.t9 | cds | g9606.t9.CDS2 | 4261309 | 4261447 |
| chr_1 | g9606 | g9606.t9 | exon | g9606.t9.exon3 | 4261547 | 4261782 |
| chr_1 | g9606 | g9606.t9 | cds | g9606.t9.CDS3 | 4261547 | 4261782 |
| chr_1 | g9606 | g9606.t9 | TTS | g9606.t9 | 4261858 | 4261858 |
Sequences
>g9606.t9 Gene=g9606 Length=457
ATGGCCACTGCATTAGCAATTTTACCAGCTGGAGCTGAAGAAATTGAATTTGTTGCATCA
GTTGATGTTTTACGACGTGCTGGTAACTGTAACAGTCGCAGGTTTAGATGGCAAAGATCC
AGTAAAATGTTCGCGTGATGTTATGGTTGTTCCTGAGGTCGCATTATCTGATGTTGCAAA
CAATAAATCATTCGATGCTATCGTTCTACCAGGGGGTTTAGCTCTCGTCTTTAAGGCACA
CAATATTGCTGTTAACAAAAAAATCACCTGCTATCCCAGTTTCCAAAAAGATTTAGGTTC
GGATTACACATTTGTCGATGAAGTAGTTGTTCAAGATGGAAAAATCATCACTTCTCAAGG
TCCATCTACAGTTTTCAAGTTTGCTCTTAAGATCGCTGAGAATTTAGTCGGAGAAGAAAA
AGCTGCAGCTGTCGCTCAAGGCATTTTATTGAAATAA
>g9606.t9 Gene=g9606 Length=130
MFYDVLVTVTVAGLDGKDPVKCSRDVMVVPEVALSDVANNKSFDAIVLPGGLALVFKAHN
IAVNKKITCYPSFQKDLGSDYTFVDEVVVQDGKIITSQGPSTVFKFALKIAENLVGEEKA
AAVAQGILLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g9606.t9 | Gene3D | G3DSA:3.40.50.880 | - | 1 | 53 | 0 |
| 8 | g9606.t9 | Gene3D | G3DSA:3.40.50.880 | - | 54 | 129 | 0 |
| 4 | g9606.t9 | PANTHER | PTHR48094:SF12 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1 | 7 | 52 | 0 |
| 6 | g9606.t9 | PANTHER | PTHR48094 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED | 7 | 52 | 0 |
| 3 | g9606.t9 | PANTHER | PTHR48094:SF12 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1 | 53 | 128 | 0 |
| 5 | g9606.t9 | PANTHER | PTHR48094 | PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED | 53 | 128 | 0 |
| 2 | g9606.t9 | Pfam | PF01965 | DJ-1/PfpI family | 8 | 53 | 0 |
| 1 | g9606.t9 | Pfam | PF01965 | DJ-1/PfpI family | 55 | 112 | 0 |
| 7 | g9606.t9 | SUPERFAMILY | SSF52317 | Class I glutamine amidotransferase-like | 7 | 128 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed