General information for g9611.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Endoribonuclease dcr-1.
Parent gene
- The parent gene g9611 is located on chr_1: 4281465..4282986 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9611 | g9611.t5 | TTS | g9611.t5 | 4279693 | 4279693 |
| chr_1 | g9611 | g9611.t5 | isoform | g9611.t5 | 4279865 | 4281465 |
| chr_1 | g9611 | g9611.t5 | exon | g9611.t5.exon1 | 4279865 | 4280312 |
| chr_1 | g9611 | g9611.t5 | cds | g9611.t5.CDS1 | 4279865 | 4280312 |
| chr_1 | g9611 | g9611.t5 | exon | g9611.t5.exon2 | 4280379 | 4281178 |
| chr_1 | g9611 | g9611.t5 | cds | g9611.t5.CDS2 | 4280379 | 4281178 |
| chr_1 | g9611 | g9611.t5 | exon | g9611.t5.exon3 | 4281246 | 4281341 |
| chr_1 | g9611 | g9611.t5 | cds | g9611.t5.CDS3 | 4281246 | 4281341 |
| chr_1 | g9611 | g9611.t5 | exon | g9611.t5.exon4 | 4281436 | 4281465 |
| chr_1 | g9611 | g9611.t5 | cds | g9611.t5.CDS4 | 4281436 | 4281465 |
| chr_1 | g9611 | g9611.t5 | TSS | g9611.t5 | 4281719 | 4281719 |
Sequences
>g9611.t5 Gene=g9611 Length=1374
ATGACAAAAGAAGAAAATATTGTAAGTGAGGTTCAAACATTCTTAACAAGAGATTATCAA
AGAAACATTATTGATGTATGTCTTAAAAGAAACTCAATTGTTTTTCTCCCAACTGGAGCT
GGCAAGACATACATCGCTATTCAAGTGATCAAGCACTTCTCAAATCAGCTTGGAATAAAA
TATTCTGAAGGTGGAAAGCGTTCTGTTTTCTTAGTAAACACAGTGTATCTTGCAAAGCAA
CAAGCTGAAGCTATACAATTTCATATTCCATTTAATGTTCGTGTCGTTACTGGCGAAGAA
AATGTTGATGCGTTTGAAGAAAGCGATTGGTTAAAAATTTTAGACAACAATGAAGTTTTA
GTGATGACAGCTCAATGCTTTCATGACGCTGTAAATCGCACTTTCATTAAAATGAATCAA
ATTCGAGTTGTAATTTTTGATGAATGTCATCATGGTCGTAAAGATCATGTATATCATCAA
CTTATGCAAAGCATATCAAACAAACTTGATGAAAACGAATTCAAGAATTTACGAATAATT
GGACTTTCAGGAATGCTTATAGGCGTCGATAACAGTATAAAACCTTACCTAGTTGCTGAT
GAAATGAAACGATTGGAAAGTACTTTTCAGAGTGTAATCATTACAGTTAATAATCTTGAT
GATCACAAAAATGTTATTCTTTATTCAACCAAAGCTATCAAGACTGCCATTCTCTTTAAT
ATGACTGCATGTTCAAAAACACTTGTTGAAGTAAAGGATTCTCTTTTATGTTTTCAAACA
AAATTAGAAATGATAAAACTAGACAATTTGGATTATATCAATCCTAGAAATTTACGAAAA
ACAATTCCAAAACGAATCAAGGAGCTTATTAACATACTCAAAGATTTTGAACATCAAGCT
TTAATGATGGGAAATTTTGGCGCATATATATCACTTGTAAGCATAATAGTACAACTCGAA
TTGAACAAAAGAGCAGCAGATTCTGAACGCTATCGCGATGTATTAAAAATGTGCATCACA
AAGGTTGAAGAATGCATAAAAAAAGTAGACTATGAATTATGCTTGAATAGAGATAATGCA
ACAAACATAATTGCAAATTCATCACATAAAGTTCAAACATTGATCGAATTGCTTCAAAAA
AGTTTTACTGATGAAAACAGAGAAAAAGACTTGCAGTGCATAATTTTCGTTGAACGTCGT
TCAACTGCAAAAATACTCTATCATATTATCAAAATGTTGGCAAACTCTATGTTTAATTTT
CCACTTCGACCTGATTTTATAGTTGGATGCAATAATGATATGCCAGAATCCATTGATGCT
ATTCTAAATAAATCTTTCAATAAGATGGCCTTGGATAAATTCAACAGGAACGAA
>g9611.t5 Gene=g9611 Length=458
MTKEENIVSEVQTFLTRDYQRNIIDVCLKRNSIVFLPTGAGKTYIAIQVIKHFSNQLGIK
YSEGGKRSVFLVNTVYLAKQQAEAIQFHIPFNVRVVTGEENVDAFEESDWLKILDNNEVL
VMTAQCFHDAVNRTFIKMNQIRVVIFDECHHGRKDHVYHQLMQSISNKLDENEFKNLRII
GLSGMLIGVDNSIKPYLVADEMKRLESTFQSVIITVNNLDDHKNVILYSTKAIKTAILFN
MTACSKTLVEVKDSLLCFQTKLEMIKLDNLDYINPRNLRKTIPKRIKELINILKDFEHQA
LMMGNFGAYISLVSIIVQLELNKRAADSERYRDVLKMCITKVEECIKKVDYELCLNRDNA
TNIIANSSHKVQTLIELLQKSFTDENREKDLQCIIFVERRSTAKILYHIIKMLANSMFNF
PLRPDFIVGCNNDMPESIDAILNKSFNKMALDKFNRNE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g9611.t5 | CDD | cd18034 | DEXHc_dicer | 17 | 217 | 0.0000000 |
| 11 | g9611.t5 | CDD | cd15903 | Dicer_PBD | 265 | 353 | 0.0000000 |
| 7 | g9611.t5 | Gene3D | G3DSA:3.40.50.300 | - | 16 | 268 | 0.0000000 |
| 8 | g9611.t5 | Gene3D | G3DSA:3.40.50.300 | - | 357 | 458 | 0.0000000 |
| 2 | g9611.t5 | PANTHER | PTHR14950:SF36 | DICER-2, ISOFORM A | 14 | 455 | 0.0000000 |
| 3 | g9611.t5 | PANTHER | PTHR14950 | DICER-RELATED | 14 | 455 | 0.0000000 |
| 1 | g9611.t5 | Pfam | PF04851 | Type III restriction enzyme, res subunit | 17 | 168 | 0.0000000 |
| 9 | g9611.t5 | ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 23 | 184 | 17.6830000 |
| 6 | g9611.t5 | SMART | SM00487 | ultradead3 | 12 | 213 | 0.0000000 |
| 5 | g9611.t5 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 14 | 186 | 0.0000000 |
| 4 | g9611.t5 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 134 | 412 | 0.0000406 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0016787 | hydrolase activity | MF |
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed