General information for g9613.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9613 is located on chr_1: 4283973..4285738 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9613 | g9613.t5 | TTS | g9613.t5 | 4283237 | 4283237 |
| chr_1 | g9613 | g9613.t5 | isoform | g9613.t5 | 4283610 | 4285164 |
| chr_1 | g9613 | g9613.t5 | exon | g9613.t5.exon1 | 4283610 | 4285081 |
| chr_1 | g9613 | g9613.t5 | cds | g9613.t5.CDS1 | 4283973 | 4285007 |
| chr_1 | g9613 | g9613.t5 | exon | g9613.t5.exon2 | 4285143 | 4285164 |
| chr_1 | g9613 | g9613.t5 | TSS | g9613.t5 | 4285836 | 4285836 |
Sequences
>g9613.t5 Gene=g9613 Length=1494
GCTGGAATTCATCGTAATTTAGGCGTTCATATTTCTCGGGTTAAATCAGTCAATCTGGAT
ACTTGGTCACCAGAGCAAGTTGTTTGTCTACAACAAATGGGAAACTCGCGAGCTCGGGCA
GTTTATGAAGCCTTATTATCTGATAATTTTCGTCGTCCACAAACGGATTCAGGATTAGAG
AGTTTTATCCGTGCAAAATATGAGCAAAAGAAGTATATAGCACGAGAATGGATTCCGCCA
CCATTTCCACCAAAAGTCAATTGGGATAAAGAAATTGAAGAAGAACTTGAAAATCAAAAA
CGAAAAAAGAAAGCATCCAACAATGTTTCATCTAATGTCACTGAAAGCACACCAACTACT
GTAAAGCCTCCAAGTGCACCATCAAAGAGCATTATACCCGCACCTCTACCAAAACCTCAT
TCTCCCAAAAACTCAAGAGTTGAGGCAAGAAAGAGTGCAACTTCAAATTCAACGAATATT
ACAGACCTATTAGGGTTAGACACTGAAACACCATCATCAGTGAATAATACATCTTTGAAT
TCAATTCCAAATTCAGATCATTCAACAATTCAAACAAGCACTCAAAATGAAAATTCTCTT
AATTTTCCTTTTACGATTACAACAAATCAAACGTCATCATCACCAGCAAATCAATTAAGT
GGAACATCCAATGGAGAAGCAAATAATAGCGCGAATCAATTGAAACAAGAAGAAGTTGAC
TTTTTCAATCAAACAACATTAGAGAATACTAGTAGTGGTGCTAAATTGACAAATGACAAA
ATTTTGGCGCTCTATGGAAATGCAAGCTCTTCTTCGCCTCAACTTCCTCAATTTAATATA
AATTTCCAACAACATACACAGCAACAACCATTATCACTTCAGGATTCATTTTTTTATGGC
AATCAACAGCCAGCTGTATTCAAGCCTCAAATTCCGTCTCAACAACAACATCAATTCTAT
CCGACTCAACCGATACAAAGTCAGCCATCATCTTTACTGTATAATGGTAATAATAACAAC
TTTGCAAATTTTGGTAATTTCGGAGGAACAATGCAATCGCAGCAAATCAACAAGCTAAAT
GAGGAAAACATAAGGAAAATTGAAAGTCTCAATTTTAATAATTTCAAGTAAACTTCCAAA
TTTATTCTATGCATCAGTTAATGCTACATAGAAACATTGAAGAAGAGATCTTCTGATAAA
CGCATTATAATGGAATTTAATAAATACTTAATTTTTAAAAAAAAAATTAGACATCAAATT
AAAATGATGAAAAGATTGAAAATGAAAGATAAAGACTTAAAGTCAAAAATAAATTAAACA
TAAATACACATACCTATATTAAGTCGGAAGATTCATGACTTCCTTTCGAAAAAAAATTCT
TTATTTTTTATGTTGAGCACACATTCACATTTTATTATATTTTTTTAATGCAATATTTTG
TATTAAATGTAAGGCATGGTTTTCATAAAATTTACCATGTTCTATAATTTTAAT
>g9613.t5 Gene=g9613 Length=344
MGNSRARAVYEALLSDNFRRPQTDSGLESFIRAKYEQKKYIAREWIPPPFPPKVNWDKEI
EEELENQKRKKKASNNVSSNVTESTPTTVKPPSAPSKSIIPAPLPKPHSPKNSRVEARKS
ATSNSTNITDLLGLDTETPSSVNNTSLNSIPNSDHSTIQTSTQNENSLNFPFTITTNQTS
SSPANQLSGTSNGEANNSANQLKQEEVDFFNQTTLENTSSGAKLTNDKILALYGNASSSS
PQLPQFNINFQQHTQQQPLSLQDSFFYGNQQPAVFKPQIPSQQQHQFYPTQPIQSQPSSL
LYNGNNNNFANFGNFGGTMQSQQINKLNEENIRKIESLNFNNFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9613.t5 | Coils | Coil | Coil | 57 | 77 | - |
| 6 | g9613.t5 | Gene3D | G3DSA:3.30.40.160 | - | 1 | 45 | 2.1E-8 |
| 5 | g9613.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 136 | - |
| 4 | g9613.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 72 | - |
| 2 | g9613.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 94 | - |
| 3 | g9613.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 136 | - |
| 1 | g9613.t5 | PANTHER | PTHR45705 | FI20236P1 | 1 | 325 | 1.7E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
