General information for g9614.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Supporter of activation of yellow protein.
Parent gene
- The parent gene g9614 is located on chr_1: 4291729..4294177 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9614 | g9614.t1 | TSS | g9614.t1 | 4287343 | 4287343 |
| chr_1 | g9614 | g9614.t1 | isoform | g9614.t1 | 4287847 | 4292849 |
| chr_1 | g9614 | g9614.t1 | exon | g9614.t1.exon1 | 4287847 | 4290906 |
| chr_1 | g9614 | g9614.t1 | cds | g9614.t1.CDS1 | 4287847 | 4290906 |
| chr_1 | g9614 | g9614.t1 | exon | g9614.t1.exon2 | 4290970 | 4291175 |
| chr_1 | g9614 | g9614.t1 | cds | g9614.t1.CDS2 | 4290970 | 4291175 |
| chr_1 | g9614 | g9614.t1 | exon | g9614.t1.exon3 | 4291236 | 4291667 |
| chr_1 | g9614 | g9614.t1 | cds | g9614.t1.CDS3 | 4291236 | 4291667 |
| chr_1 | g9614 | g9614.t1 | exon | g9614.t1.exon4 | 4291729 | 4291905 |
| chr_1 | g9614 | g9614.t1 | cds | g9614.t1.CDS4 | 4291729 | 4291905 |
| chr_1 | g9614 | g9614.t1 | exon | g9614.t1.exon5 | 4291970 | 4292102 |
| chr_1 | g9614 | g9614.t1 | cds | g9614.t1.CDS5 | 4291970 | 4292102 |
| chr_1 | g9614 | g9614.t1 | exon | g9614.t1.exon6 | 4292165 | 4292312 |
| chr_1 | g9614 | g9614.t1 | cds | g9614.t1.CDS6 | 4292165 | 4292312 |
| chr_1 | g9614 | g9614.t1 | exon | g9614.t1.exon7 | 4292371 | 4292556 |
| chr_1 | g9614 | g9614.t1 | cds | g9614.t1.CDS7 | 4292371 | 4292556 |
| chr_1 | g9614 | g9614.t1 | exon | g9614.t1.exon8 | 4292623 | 4292849 |
| chr_1 | g9614 | g9614.t1 | cds | g9614.t1.CDS8 | 4292623 | 4292849 |
| chr_1 | g9614 | g9614.t1 | TTS | g9614.t1 | NA | NA |
Sequences
>g9614.t1 Gene=g9614 Length=4569
ATGAATGAAATTGATCCTTCTACAAACGGTAGTTTATCAACGATAGAGAATCAGCAAGAG
CAACAAAACGCTAGCAAATCTCCTCTTTTATCAACTCTCCTAACATCGTCCAAACATCAG
CACGAAATTATATCAAATGGACAGCAGGAGAAATCAAGAAATCTACATGGATTGATGATG
CCTTCTTCAGCTGGAACAACAACTTCAGCTATTGTCTCAAATCCGCAATATCACGAGGAG
GCATCAGCAGCAGCCACTGCCGCAACTATCTTAAAGCGTGCACTACCACCATCATCTTCT
AACGAAATTATTATAGACGAAGTGACTGGGATTAATCAACTCAATACATCTAACAATAGT
CACAAACGATATAATAATTTGAATGACATTTTGCAGCGTAATAATAATAATAATAAAGTG
GAAACATTAGCTACACCAACAAAATCCATCCTGGAAAATTGTTTATTAAAACCAGCAACT
ATTAAAAGTCAGCAACATTATCGACTTGAATCTCAATTTTATAATAATAAAATGAATGAA
AGTGAATATCATTCATCGAGTGGTACATCTGCATCAACAAATGCAGTAAATGCAGTAGCA
GGAAATGCATCAGTTCTAAAATTTGTTCATCAGAGTGAAGAAAATCGTAAAGTGGAGCCG
TTGAAAATTAATTTAAATCGTGAACCAATAAGAACTGTCATAAAATTACCACAAACTCAT
GCTTTCGATAATAATAGTAGTAGCAGCAATAGTCCAACAAAAATTACAATCAAACCACCT
CAGCCTCCACTTACGGATCGAAATATTAGCGTAATTACTTCACCATCAGCATCGATTTCT
ATTTCACCAACGCTATCATCATCTTCACTTTCATCTGAATCATCATATGAGACACTAAAT
GATTCACAACAACGTCCATCATCAATACAAGTGGTTCCTAAACTTCATTTTCGAACACCA
CTTAATCATGAGCAGTCAGAGCTCCACATTGTGCCTAAACTAACAATTACTGGTCTTAAT
TCACCACAAACATCTGCAACACTTCAGACTCAGCAATTAAATGAGCAGCAGACAAGAGAT
AACAGTAATTGTATAAATAATGTCATAGAAAGTCCAACGATCCCAAAATTGACACTTAAA
AAGGACAACAATACAAATGAAGGATTTTATCACTTAAATCATGAGGGACATGCAATACCG
AAACTTCACATAAAGACTAATCATTTACACCATCATCATCATCATAATACACAAAAGGAT
GTGAAATTAACCATTAAACCAATCATGGAGCAAACACAACCACCAGTGCCCAAATTAACG
ATCAAAACTACCGACAATGATACAATGACTGTTGTAAATTCATCTTCTAATATTTCTGAA
AATGAACAACAAGCTACTATACCAAAATTAACGATTAAAACAAATCAACAGTCAACAACA
CCGAAACTCACAATAAAACCATTGATGAGGCCTTCAGAAGAAACTTTAACTATACAATCT
GAACAAGAGTCTCAGCAACAGCAGCAGCAGCAACAAGAAGAATCGATTCCTAAATTAACG
CTGAAAGCGATAAATAACAGTTCAAATTTTGAGAAGGTTGTGCCCAAGTTGGTCGTAAAA
CTTCCGAAGGAAAAGAAACAGCATCGTAAAGAAGAGGAACAATTAATGAAAGATGAACAA
GATGAAAAAGAATCGTCTTCATGTAGTTCAACTCCTTCACCACCGCCTCCTCTTGTATCA
AAATTAAATATTAAACCCATTAAGGAAGTGCCTAAGCCACAACAGCAACAGTCAGTGAAT
TGTAATGACAATGATATGATGAAATTTTCAATAAATCGTTTGATTGGAGGATCAACAACT
GCAACAATAACAGAAAAAGAAGAAAATAATGATGAAGTGAGTGAAATTAATGTTTATAGA
CCATTAGAAATCAATACGACGAGTGTTTTAAAGAATGCTGATTCAGGGCAAGATTCGCCA
AGAATTATCCTTAAAATAAATAAAACAAATAATGAATCCATCACAACGGAATTAATTCCA
ACGACTGATAATGTACAGAAATCAATAAATCATAATAAAAGAACACATTCAAATGATCAC
GTTGAAGAAGATGAAGAACAATCGAAAAAGCCTAAATTGACACAAGAAGATGATGATGTT
ATTATTATAAATGATAGTGATGCATCAAGTGAGGCCACTTCTAATCAAATTAAAAATCAT
CAACAACCTGCACAAGTACAAGAGGCTATAAATGATGATACATCTTCTAAAAATGATGAT
GCATCAAAAATTAATGCAGCGATAACAACAACAACAACGTCTCTTGCAGCTGGTAGAAGT
TTAAGGCAATCAAGAAGAACGATAATTCCCAAGGAACCAATTGTTACAAAGGCACAGTTG
AGAAAACAAAAGCAGCAACAGCAGCAGAAACAAGAAGAAATTCAACAAAATAATATTTCA
CCAACATCTATACCTTTGCAGGAGCAAGAAAATTCTCAATCGACAACTAAAGAAGACTCA
CAATTAAATGATATGATGTTAGATCCATTGGCTCTCTCGAATGATGGAACAATAAATTCA
AATTCAGTAGATGAAATAATAACACCCAAAAGAGGTCGTGGACGACCGAAAAAAATTGCA
CAAGTAACAACAGTTCAAGAGGAAGAACAATCTGAATCAAGAGATCCATTAGAAATTTCA
TCAACAAATAATGACAACAATAGCTCACAAGAGACTTTACAATCTGATGTTAATGAAATT
TCATTGGACAAGAAAACACCAGGAATTAGAGGAAGAGGTCGAGGTCGTGGCAGACTAAAG
AGAACTGTTGAAGTAATTAAAAATGGAAAGCCTATACAAATTACTCTTGAGGGCCATGAT
GATGATGATTCTCCCTCATTTTCATTGTACAATCGAAGTTTAAGAGGTGGTTTTAGCACT
GGTAAACGATCAAAAGTCAAAAGTATTCGAGGCAAAGGCTCAAAATCATCACCATTCCTT
ACTCCTGAACGCTCAAAAGACGGAAATTTCATGACACCTATAATTAATAGTGATGTTAAG
GAAAATCGTCGAAAGCTTTTTAATACACCATCATTATTTGAGGAAGATACTCGTATGAGT
ATTGGTGGAAGTGAAACACCGATGCGATCATCAGAACTGCATTCAAATGAAGAGTCACAA
AGTTCAATTTTAAGTAGCACAAGTAACACTGTGGAAGGCTCAGCGAGAAAAAAGATGAAA
AAGATGGAAGTTTGTGAGCCTGAAGGACGTACCGAGTTTACAATCGACATGATTGCAGAA
TACGATTGGCCACCACATGAGACTGGAAGAAATCGTGAAACTTATATGATTCAAGAACAA
ATTGCAGAGTATTTAGGTGTAAAAAGCTTTAAAAGAAAATATCCAGATTTAATGCGACGA
CCAGTCGACATGGAAGAACGAAATTTTCTTTTTGAAAATGGTTTAGCATCTGAAAAAATG
TGTGATCTTGGATTAACGGCAGTTTATGCTAGTGAAGTTCTTGATATCATGTGTAACGAT
TATCCAGAAAAATATGAAGAGTACAAAAGGTATCAGCGAGAAAAAATCTTTAGGCATGCA
CGATTACGCCTTGAGACTGCAGTTATCGATAGAAGTCAAATGCAGAAAGACAAAGCCATA
TCATCTGCATCTGACTGGAATGCTAAATTTAATAAAGATCGTAGAGAAAATCGTCTTTGT
TGCATGGATTTACAAAACTTTTTAGTACAGAAGCCTATTCCAGTCAGAGATTACAAATAT
ACACCATCAGCAACTCATCAGTCTCCTTATCCTGTCGCTTTAGTGCCAGGACAATTTAGT
GAATTTTATGAAAAATATACCCCTGAGCAACTGGCTTGTTATCCAATAAATACAGTTTTG
GTTGATTTTGATAAGTTGGAAAATTATATAAAAACCCATCAGAGTCCTTACGAGTCAAGC
GACAGCAGTGATAATTCTGATAGTGAAGATGAAGGCAGTAGCTCATCTAGCACTGATTCT
TCAAGTGATAGTGAAAGCGATTCTTCAGATGATGATTATGAAGATCCAAAATGTAGGGTG
TGTTCTGAAACTCCTTATAAAAATAAATTCAATCAACCTGAGAAGTTTATTAAATGCACA
ACCTGCAAGCATCAAGCACATCCTTCATGTATTGAAATGCCACAAAGAATGTATGTTAGA
ACGTTAGCTTATAAATGGCAATGCGCAAACTGTAAGACATGTTGCAAGTGTGAAAAACAA
AAAGACAACAAAATGTTATATTGCATTCAGTGCGATAGAGGTTTTCACATTTATTGTCTA
GGATTAAGGAATGTTCCTGAAGGTCAATATCACTGTGTCAATTGTACAATTTGTTCTGAA
TGTGGAGCGAAATCTCCTGAAGGTCACTTTAATCCGGCACTAACACAACAACAACGACAA
GATTTGGCAATGATCGCTCAATGGAATCATGAATTTTCCGTGAATACTCTAACAAATCTA
AAGGAGCACAAAACAAGTCTATGTCTGCCATGTTTTAGAAAAAATAACCAAAAGAAAACG
GAGAACTAA
>g9614.t1 Gene=g9614 Length=1522
MNEIDPSTNGSLSTIENQQEQQNASKSPLLSTLLTSSKHQHEIISNGQQEKSRNLHGLMM
PSSAGTTTSAIVSNPQYHEEASAAATAATILKRALPPSSSNEIIIDEVTGINQLNTSNNS
HKRYNNLNDILQRNNNNNKVETLATPTKSILENCLLKPATIKSQQHYRLESQFYNNKMNE
SEYHSSSGTSASTNAVNAVAGNASVLKFVHQSEENRKVEPLKINLNREPIRTVIKLPQTH
AFDNNSSSSNSPTKITIKPPQPPLTDRNISVITSPSASISISPTLSSSSLSSESSYETLN
DSQQRPSSIQVVPKLHFRTPLNHEQSELHIVPKLTITGLNSPQTSATLQTQQLNEQQTRD
NSNCINNVIESPTIPKLTLKKDNNTNEGFYHLNHEGHAIPKLHIKTNHLHHHHHHNTQKD
VKLTIKPIMEQTQPPVPKLTIKTTDNDTMTVVNSSSNISENEQQATIPKLTIKTNQQSTT
PKLTIKPLMRPSEETLTIQSEQESQQQQQQQQEESIPKLTLKAINNSSNFEKVVPKLVVK
LPKEKKQHRKEEEQLMKDEQDEKESSSCSSTPSPPPPLVSKLNIKPIKEVPKPQQQQSVN
CNDNDMMKFSINRLIGGSTTATITEKEENNDEVSEINVYRPLEINTTSVLKNADSGQDSP
RIILKINKTNNESITTELIPTTDNVQKSINHNKRTHSNDHVEEDEEQSKKPKLTQEDDDV
IIINDSDASSEATSNQIKNHQQPAQVQEAINDDTSSKNDDASKINAAITTTTTSLAAGRS
LRQSRRTIIPKEPIVTKAQLRKQKQQQQQKQEEIQQNNISPTSIPLQEQENSQSTTKEDS
QLNDMMLDPLALSNDGTINSNSVDEIITPKRGRGRPKKIAQVTTVQEEEQSESRDPLEIS
STNNDNNSSQETLQSDVNEISLDKKTPGIRGRGRGRGRLKRTVEVIKNGKPIQITLEGHD
DDDSPSFSLYNRSLRGGFSTGKRSKVKSIRGKGSKSSPFLTPERSKDGNFMTPIINSDVK
ENRRKLFNTPSLFEEDTRMSIGGSETPMRSSELHSNEESQSSILSSTSNTVEGSARKKMK
KMEVCEPEGRTEFTIDMIAEYDWPPHETGRNRETYMIQEQIAEYLGVKSFKRKYPDLMRR
PVDMEERNFLFENGLASEKMCDLGLTAVYASEVLDIMCNDYPEKYEEYKRYQREKIFRHA
RLRLETAVIDRSQMQKDKAISSASDWNAKFNKDRRENRLCCMDLQNFLVQKPIPVRDYKY
TPSATHQSPYPVALVPGQFSEFYEKYTPEQLACYPINTVLVDFDKLENYIKTHQSPYESS
DSSDNSDSEDEGSSSSSTDSSSDSESDSSDDDYEDPKCRVCSETPYKNKFNQPEKFIKCT
TCKHQAHPSCIEMPQRMYVRTLAYKWQCANCKTCCKCEKQKDNKMLYCIQCDRGFHIYCL
GLRNVPEGQYHCVNCTICSECGAKSPEGHFNPALTQQQRQDLAMIAQWNHEFSVNTLTNL
KEHKTSLCLPCFRKNNQKKTEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g9614.t1 | CDD | cd15529 | PHD2_PHF10 | 1413 | 1455 | 3.01691E-18 |
| 9 | g9614.t1 | Coils | Coil | Coil | 795 | 817 | - |
| 8 | g9614.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 1353 | 1458 | 5.1E-21 |
| 27 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - |
| 30 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 261 | - |
| 25 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 255 | - |
| 18 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 307 | - |
| 24 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 515 | - |
| 22 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 578 | - |
| 26 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 565 | - |
| 16 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 760 | - |
| 20 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 719 | - |
| 21 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 752 | - |
| 23 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 840 | - |
| 14 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 799 | 840 | - |
| 17 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 936 | - |
| 19 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 921 | - |
| 28 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 979 | 1004 | - |
| 13 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1083 | - |
| 29 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1043 | 1073 | - |
| 15 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1314 | 1351 | - |
| 31 | g9614.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1329 | 1343 | - |
| 2 | g9614.t1 | PANTHER | PTHR10615:SF174 | PHD FINGER PROTEIN 10 | 1095 | 1339 | 5.8E-80 |
| 4 | g9614.t1 | PANTHER | PTHR10615 | HISTONE ACETYLTRANSFERASE | 1095 | 1339 | 5.8E-80 |
| 3 | g9614.t1 | PANTHER | PTHR10615:SF174 | PHD FINGER PROTEIN 10 | 1352 | 1469 | 5.8E-80 |
| 5 | g9614.t1 | PANTHER | PTHR10615 | HISTONE ACETYLTRANSFERASE | 1352 | 1469 | 5.8E-80 |
| 1 | g9614.t1 | Pfam | PF00628 | PHD-finger | 1358 | 1414 | 7.7E-7 |
| 32 | g9614.t1 | ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1408 | 1458 | 9.276 |
| 11 | g9614.t1 | SMART | SM00249 | PHD_3 | 1357 | 1412 | 4.2E-5 |
| 12 | g9614.t1 | SMART | SM00249 | PHD_3 | 1413 | 1456 | 6.8E-7 |
| 7 | g9614.t1 | SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1345 | 1412 | 9.75E-6 |
| 6 | g9614.t1 | SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1402 | 1461 | 3.99E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0071564 | npBAF complex | CC |
KEGG
Orthology
- This transcript has been annotated with K22197 (BRG1-associated factor 45A)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
