General information for g9614.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9614 is located on chr_1: 4291729..4294177 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9614 | g9614.t2 | isoform | g9614.t2 | 4286264 | 4288864 |
| chr_1 | g9614 | g9614.t2 | exon | g9614.t2.exon1 | 4286264 | 4286484 |
| chr_1 | g9614 | g9614.t2 | exon | g9614.t2.exon2 | 4287743 | 4288864 |
| chr_1 | g9614 | g9614.t2 | cds | g9614.t2.CDS1 | 4287847 | 4288863 |
| chr_1 | g9614 | g9614.t2 | TTS | g9614.t2 | 4289716 | 4289716 |
| chr_1 | g9614 | g9614.t2 | TSS | g9614.t2 | NA | NA |
Sequences
>g9614.t2 Gene=g9614 Length=1343
GAAGTCAAGTTGCAAGTATTCAAAGCGAAGTTTGAGAATCTTAATTTATTAAGAAATTTA
CTGAAAAAAATTAAATAAAGTCATTATATGCGCGGTAAAAGTGTTTTAATTTAAAAATAG
AATCATTGGTGCATAAAACAAAGATTAATTTCAGTGTGCTAGACGTCTAAAAAATTGTAA
AAGTGTGAAATAAAGTTGCGTTCATTTTTCTTAGCTTGAAGCATTTTATTAAATTATTGA
TTATTCTTGAAGTACACATGCAAATAAGTATGCGAAAAATGTTGTAGACAACAAATTTTT
ATTCGCAAGAACATAATTAAACAGCATGAATGAAATTGATCCTTCTACAAACGGTAGTTT
ATCAACGATAGAGAATCAGCAAGAGCAACAAAACGCTAGCAAATCTCCTCTTTTATCAAC
TCTCCTAACATCGTCCAAACATCAGCACGAAATTATATCAAATGGACAGCAGGAGAAATC
AAGAAATCTACATGGATTGATGATGCCTTCTTCAGCTGGAACAACAACTTCAGCTATTGT
CTCAAATCCGCAATATCACGAGGAGGCATCAGCAGCAGCCACTGCCGCAACTATCTTAAA
GCGTGCACTACCACCATCATCTTCTAACGAAATTATTATAGACGAAGTGACTGGGATTAA
TCAACTCAATACATCTAACAATAGTCACAAACGATATAATAATTTGAATGACATTTTGCA
GCGTAATAATAATAATAATAAAGTGGAAACATTAGCTACACCAACAAAATCCATCCTGGA
AAATTGTTTATTAAAACCAGCAACTATTAAAAGTCAGCAACATTATCGACTTGAATCTCA
ATTTTATAATAATAAAATGAATGAAAGTGAATATCATTCATCGAGTGGTACATCTGCATC
AACAAATGCAGTAAATGCAGTAGCAGGAAATGCATCAGTTCTAAAATTTGTTCATCAGAG
TGAAGAAAATCGTAAAGTGGAGCCGTTGAAAATTAATTTAAATCGTGAACCAATAAGAAC
TGTCATAAAATTACCACAAACTCATGCTTTCGATAATAATAGTAGTAGCAGCAATAGTCC
AACAAAAATTACAATCAAACCACCTCAGCCTCCACTTACGGATCGAAATATTAGCGTAAT
TACTTCACCATCAGCATCGATTTCTATTTCACCAACGCTATCATCATCTTCACTTTCATC
TGAATCATCATATGAGACACTAAATGATTCACAACAACGTCCATCATCAATACAAGTGGT
TCCTAAACTTCATTTTCGAACACCACTTAATCATGAGCAGTCAGAGCTCCACATTGTGCC
TAAACTAACAATTACTGGTCTTA
>g9614.t2 Gene=g9614 Length=339
MNEIDPSTNGSLSTIENQQEQQNASKSPLLSTLLTSSKHQHEIISNGQQEKSRNLHGLMM
PSSAGTTTSAIVSNPQYHEEASAAATAATILKRALPPSSSNEIIIDEVTGINQLNTSNNS
HKRYNNLNDILQRNNNNNKVETLATPTKSILENCLLKPATIKSQQHYRLESQFYNNKMNE
SEYHSSSGTSASTNAVNAVAGNASVLKFVHQSEENRKVEPLKINLNREPIRTVIKLPQTH
AFDNNSSSSNSPTKITIKPPQPPLTDRNISVITSPSASISISPTLSSSSLSSESSYETLN
DSQQRPSSIQVVPKLHFRTPLNHEQSELHIVPKLTITGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9614.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - |
| 1 | g9614.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 263 | - |
| 3 | g9614.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 255 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
