Gene loci information

Transcript annotation

  • This transcript has been annotated as Eukaryotic translation initiation factor 2-alpha kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9617 g9617.t3 isoform g9617.t3 4302720 4304272
chr_1 g9617 g9617.t3 exon g9617.t3.exon1 4302720 4303768
chr_1 g9617 g9617.t3 cds g9617.t3.CDS1 4302721 4303768
chr_1 g9617 g9617.t3 exon g9617.t3.exon2 4304064 4304272
chr_1 g9617 g9617.t3 cds g9617.t3.CDS2 4304064 4304272
chr_1 g9617 g9617.t3 TSS g9617.t3 4304430 4304430
chr_1 g9617 g9617.t3 TTS g9617.t3 NA NA

Sequences

>g9617.t3 Gene=g9617 Length=1258
ATGAAATTAATTTCGCTAGTAAATCGGCTACTTCCAGAATGTTCATACAAATTATTTGTG
CCGATAGTTTTTGGCATTTTATTATATGCAACAAAAAGTATTGCATCTGAGAACTTTGAT
GTTGATTATGTTGAAGGAGAAATAAGAACAGTAGAAGGAATATCGTTTTGTGATGAGAGC
CTTATAAAAGAGCGAGGATTGACAAAAAGGCTTCTTTTTATATCAACATTGGATGGTGGT
GTGACAGCATTAGATTTGACTAAAGATGGTCAAATTTTATGGGATATTTCAACAGGAGAA
CTGCTTTCATCTTCGATCCATCAAATGGAGATGACAAATCAAGGAAAATCTGTGCGAATG
ATACCGAGTTTAAATGGTGGCATTTATAAATTTGATGGCGAGTCGGTTGAAGCAATTCCA
GTGAATGCAGAAGATTTATTAAAAAGTTCATTCAAGTTCAAAGATGATATTGTAATGTCT
GGAAATCAAGAAGTAAAAACATACGGTGTAAATTGCAGAACAGGACAAGTTGTTTATGAG
CATCCGATTGGTGGCACAAGTAAAAAGAAAACAAATGATACATCTGATAAGGACTCAAAT
AAGAATGAAAATAGTCCAAGAACGACATCTGATTTAGTTCTTGATGATATTCTTGTAGTA
AGAAGATTTTCACAAACTGTCAGAGCAAATGAACCACGTAGTGGAGAAGAAAGGTGGAAT
TTTTCAATTGGCCATCATGAAATGCAAGTTGATCTAAGTGATAATTGTCACAAGAATGGT
GAAAGTGATATGATTGATAGAATGATACATGATACTGAAATTCGAGTTATAATTCCAGAA
GGTATCATTGTAGGATATAATAAGTACAATCCGAATGTAATTTTATGGAAACATAAATTT
AATTCACCAATCGTTAGCGTTTTCCGTTCTGATGAAAATAATCAATTGCATAATGTTGAT
CTTTTTGCTAATTCTCGCTGGCTTTGGGAAGAACATGGCAATCAATATTTTGTAAAAGCA
TCAGGTGATTCAAAATTTTCACCATCTCTTTATTTGGGTATTTACAATCAACAATATTAC
ATACAAGAATCCAATATGATGAAGTCTACCCTTGATAATATCAAAAAACAAGATCAAAAT
CTTGTTGAAGATGAAAGTAGACTTTTAAAAATTCCATTCAAACCCATTCCTGCCTCTAAT
AATGCACTTATTGATTTCGTTTCAAAGTTTAATACCAAAATTGAGAATATATCAAATG

>g9617.t3 Gene=g9617 Length=419
MKLISLVNRLLPECSYKLFVPIVFGILLYATKSIASENFDVDYVEGEIRTVEGISFCDES
LIKERGLTKRLLFISTLDGGVTALDLTKDGQILWDISTGELLSSSIHQMEMTNQGKSVRM
IPSLNGGIYKFDGESVEAIPVNAEDLLKSSFKFKDDIVMSGNQEVKTYGVNCRTGQVVYE
HPIGGTSKKKTNDTSDKDSNKNENSPRTTSDLVLDDILVVRRFSQTVRANEPRSGEERWN
FSIGHHEMQVDLSDNCHKNGESDMIDRMIHDTEIRVIIPEGIIVGYNKYNPNVILWKHKF
NSPIVSVFRSDENNQLHNVDLFANSRWLWEEHGNQYFVKASGDSKFSPSLYLGIYNQQYY
IQESNMMKSTLDNIKKQDQNLVEDESRLLKIPFKPIPASNNALIDFVSKFNTKIENISN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g9617.t3 Gene3D G3DSA:2.130.10.10 - 65 364 1.5E-10
3 g9617.t3 MobiDBLite mobidb-lite consensus disorder prediction 181 208 -
2 g9617.t3 MobiDBLite mobidb-lite consensus disorder prediction 186 204 -
1 g9617.t3 SUPERFAMILY SSF50998 Quinoprotein alcohol dehydrogenase-like 70 249 7.2E-12

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values