Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9619 g9619.t3 TTS g9619.t3 4305152 4305152
chr_1 g9619 g9619.t3 isoform g9619.t3 4305218 4305801
chr_1 g9619 g9619.t3 exon g9619.t3.exon1 4305218 4305303
chr_1 g9619 g9619.t3 cds g9619.t3.CDS1 4305271 4305303
chr_1 g9619 g9619.t3 exon g9619.t3.exon2 4305527 4305801
chr_1 g9619 g9619.t3 cds g9619.t3.CDS2 4305527 4305574
chr_1 g9619 g9619.t3 TSS g9619.t3 4306739 4306739

Sequences

>g9619.t3 Gene=g9619 Length=361
ATGTTAAATATTTATATAAAAGATGTCGATATTCAACAATTGAAGGAGAAACAGACAAAT
ATAGACTCTTTACAATATCAAATCCACTACATAAAGCTGGAAAACAAAGAGGATTTTTGC
AACAATGGAATATTGAGACTGGTCGACTCAATAATATAGTTAGCATAGATGAAAGCCTTT
CAGCATTAGCCGTTCGTGATGATGGTCGTTTTGTATCAATTGGAACAATGTTTACTGGTT
CAGTTATGATTTATATTGCATTTAGTTTACAACAAATACGTTGCCAGCATGGGCTGCAAT
ATTTTTAATAATTGTTATTCTTTTCCTCACATTTTTAATGTGTTCTTACTTTGGTATATA
A

>g9619.t3 Gene=g9619 Length=26
MFTGSVMIYIAFSLQQIRCQHGLQYF

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed