General information for g9622.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9622 is located on chr_1: 4318341..4319499 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9622 | g9622.t4 | isoform | g9622.t4 | 4318006 | 4319130 |
| chr_1 | g9622 | g9622.t4 | TSS | g9622.t4 | 4318006 | 4318006 |
| chr_1 | g9622 | g9622.t4 | exon | g9622.t4.exon1 | 4318006 | 4318119 |
| chr_1 | g9622 | g9622.t4 | exon | g9622.t4.exon2 | 4318251 | 4318384 |
| chr_1 | g9622 | g9622.t4 | exon | g9622.t4.exon3 | 4318542 | 4319130 |
| chr_1 | g9622 | g9622.t4 | cds | g9622.t4.CDS1 | 4318734 | 4319129 |
| chr_1 | g9622 | g9622.t4 | TTS | g9622.t4 | 4319666 | 4319666 |
Sequences
>g9622.t4 Gene=g9622 Length=837
CAGTTTCATTCTGACAGTCTTTCTATAAACATCATTTGAAAATTTAATTTCTTCAGAAAC
AATTATCTGTTAAACTAATTAAAATATGATGAAACTCAAATCTAATTAAAAACTATAAGA
GGCTTCCGAGACTGACATAAATAATTTTAAGACAAATAGTTAATCTTTATAGTTCAGAGT
TTGGTGTTTAAAAAAATACCAAAAATGAATCCTGAATGGTCAAAAGTGGTCGTTATGCTA
ACCTTAGGGAATTTTGATGGCAACTTCATTAGTGCATATGTTACCTGAAGTAAAATTATT
TATTTTATAAAGCATAAACCTCCTTCCTAATTCTATCATTGTTTTAGGTTAGTGAAGATC
TTGGTCATGGTCTCTCAGAAATTATTTTTTGCATAGGATTTTTAATTGTATATTTGGCCG
ATGAATTACTTCATTTTTGTATGGGTGAAGCTATACAACACAATCATTCTCATAATTTAA
ATATTGAAGAACAACAACCAATTATGCATCAACATTCACATCATCGTCGAAGTAAAACTC
CATCATATGGATCAGTGGAAGAGTATCAACATCAATCATGTGAAGAACATCAGCATCAAC
ATGATATTGAAGATGAAAGAATAAATGAAAGAATTTGTCATACAACTCATATTGAACCTT
GCAATCAAACGCTAGCTGGCGTTATTGGAATGCTGACTGCTCTCTCAGTACATTCTTTGA
TTGAAGGACTTGCTATAGGTATTCAAGACTCGACATCTAAAGTAATGCTTCTTTTTGGTG
CTGTTGTCTCACATAAATTCGTTGTTGGTTTTTGTTTAGGTGTAGAACTATCAGCTT
>g9622.t4 Gene=g9622 Length=132
MGEAIQHNHSHNLNIEEQQPIMHQHSHHRRSKTPSYGSVEEYQHQSCEEHQHQHDIEDER
INERICHTTHIEPCNQTLAGVIGMLTALSVHSLIEGLAIGIQDSTSKVMLLFGAVVSHKF
VVGFCLGVELSA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g9622.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 55 | - |
| 2 | g9622.t4 | PANTHER | PTHR11040:SF169 | FI24038P1 | 2 | 132 | 5.4E-23 |
| 3 | g9622.t4 | PANTHER | PTHR11040 | ZINC/IRON TRANSPORTER | 2 | 132 | 5.4E-23 |
| 1 | g9622.t4 | Pfam | PF02535 | ZIP Zinc transporter | 6 | 131 | 2.2E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0046873 | metal ion transmembrane transporter activity | MF |
| GO:0030001 | metal ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
