Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein zntD.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9622 g9622.t5 isoform g9622.t5 4318006 4319499
chr_1 g9622 g9622.t5 TSS g9622.t5 4318006 4318006
chr_1 g9622 g9622.t5 exon g9622.t5.exon1 4318006 4318123
chr_1 g9622 g9622.t5 exon g9622.t5.exon2 4318251 4318384
chr_1 g9622 g9622.t5 cds g9622.t5.CDS1 4318341 4318384
chr_1 g9622 g9622.t5 exon g9622.t5.exon3 4318441 4318582
chr_1 g9622 g9622.t5 cds g9622.t5.CDS2 4318441 4318582
chr_1 g9622 g9622.t5 exon g9622.t5.exon4 4318641 4319133
chr_1 g9622 g9622.t5 cds g9622.t5.CDS3 4318641 4319133
chr_1 g9622 g9622.t5 exon g9622.t5.exon5 4319192 4319499
chr_1 g9622 g9622.t5 cds g9622.t5.CDS4 4319192 4319499
chr_1 g9622 g9622.t5 TTS g9622.t5 4319666 4319666

Sequences

>g9622.t5 Gene=g9622 Length=1195
CAGTTTCATTCTGACAGTCTTTCTATAAACATCATTTGAAAATTTAATTTCTTCAGAAAC
AATTATCTGTTAAACTAATTAAAATATGATGAAACTCAAATCTAATTAAAAACTGTAAAT
AAGAGGCTTCCGAGACTGACATAAATAATTTTAAGACAAATAGTTAATCTTTATAGTTCA
GAGTTTGGTGTTTAAAAAAATACCAAAAATGAATCCTGAATGGTCAAAAGTGGTCGTTAT
GCTAACCTTAGGATTAGGAAGCATGATCGTTGGAATGATTCCTTTAGCATTTACGCAATA
TAATTTAAGAAGAAATCCATTGCTATTTACATTTCTACTTTGCTTTGGTGCAGGAATTTT
GATGGCAACTTCATTAGTGCATATGTTACCTGAAGTTAGTGAAGATCTTGGTCATGGTCT
CTCAGAAATTATTTTTTGCATAGGATTTTTAATTGTATATTTGGCCGATGAATTACTTCA
TTTTTGTATGGGTGAAGCTATACAACACAATCATTCTCATAATTTAAATATTGAAGAACA
ACAACCAATTATGCATCAACATTCACATCATCGTCGAAGTAAAACTCCATCATATGGATC
AGTGGAAGAGTATCAACATCAATCATGTGAAGAACATCAGCATCAACATGATATTGAAGA
TGAAAGAATAAATGAAAGAATTTGTCATACAACTCATATTGAACCTTGCAATCAAACGCT
AGCTGGCGTTATTGGAATGCTGACTGCTCTCTCAGTACATTCTTTGATTGAAGGACTTGC
TATAGGTATTCAAGACTCGACATCTAAAGTAATGCTTCTTTTTGGTGCTGTTGTCTCACA
TAAATTCGTTGTTGGTTTTTGTTTAGGTGTAGAACTATCAGCTTCTGCTGGTGCAAAATT
TCTTCATCATTTCATAGCAATATTTGTATTCTCAGCCGGTAGTGTTTTAGGCATTGGAAT
TGGAATGGCGCTTGTCGATCTAAATTCAGTTGTTGACTCAAAATTCTTACCAATTATGCA
AGGTATTGCTGGTGGAACTCTTTTGTACGTTACTGTTTGTGAGGTTCTTCCTAGAGAAAA
AGCACGTTGGCATCAAAACCGAGTTAATAAAGCGGCAGGTTTAGCACAATTGCTGGCTTT
CACATTAGGATTTGCTGTAATGACACTTTTAAATATGTATGTAACTGAAAATTAA

>g9622.t5 Gene=g9622 Length=328
MNPEWSKVVVMLTLGLGSMIVGMIPLAFTQYNLRRNPLLFTFLLCFGAGILMATSLVHML
PEVSEDLGHGLSEIIFCIGFLIVYLADELLHFCMGEAIQHNHSHNLNIEEQQPIMHQHSH
HRRSKTPSYGSVEEYQHQSCEEHQHQHDIEDERINERICHTTHIEPCNQTLAGVIGMLTA
LSVHSLIEGLAIGIQDSTSKVMLLFGAVVSHKFVVGFCLGVELSASAGAKFLHHFIAIFV
FSAGSVLGIGIGMALVDLNSVVDSKFLPIMQGIAGGTLLYVTVCEVLPREKARWHQNRVN
KAAGLAQLLAFTLGFAVMTLLNMYVTEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9622.t5 PANTHER PTHR11040:SF169 FI24038P1 6 326 7.6E-98
3 g9622.t5 PANTHER PTHR11040 ZINC/IRON TRANSPORTER 6 326 7.6E-98
1 g9622.t5 Pfam PF02535 ZIP Zinc transporter 7 321 1.7E-59
19 g9622.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
25 g9622.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 26 -
14 g9622.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 27 37 -
21 g9622.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 38 61 -
18 g9622.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 62 66 -
24 g9622.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 67 86 -
12 g9622.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 87 170 -
23 g9622.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 171 195 -
17 g9622.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 196 200 -
26 g9622.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 201 223 -
15 g9622.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 224 234 -
27 g9622.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 235 256 -
20 g9622.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 257 267 -
22 g9622.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 268 287 -
13 g9622.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 288 307 -
28 g9622.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 308 325 -
16 g9622.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 326 328 -
6 g9622.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 29 -
7 g9622.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 38 60 -
5 g9622.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 70 92 -
11 g9622.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 170 192 -
4 g9622.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 202 221 -
10 g9622.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 234 256 -
9 g9622.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 266 283 -
8 g9622.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 304 326 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0046873 metal ion transmembrane transporter activity MF
GO:0030001 metal ion transport BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values