Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9622 g9622.t6 isoform g9622.t6 4318006 4319499
chr_1 g9622 g9622.t6 TSS g9622.t6 4318006 4318006
chr_1 g9622 g9622.t6 exon g9622.t6.exon1 4318006 4318119
chr_1 g9622 g9622.t6 exon g9622.t6.exon2 4318251 4318384
chr_1 g9622 g9622.t6 cds g9622.t6.CDS1 4318341 4318384
chr_1 g9622 g9622.t6 exon g9622.t6.exon3 4318441 4318582
chr_1 g9622 g9622.t6 cds g9622.t6.CDS2 4318441 4318582
chr_1 g9622 g9622.t6 exon g9622.t6.exon4 4318641 4319133
chr_1 g9622 g9622.t6 cds g9622.t6.CDS3 4318641 4319133
chr_1 g9622 g9622.t6 exon g9622.t6.exon5 4319255 4319499
chr_1 g9622 g9622.t6 cds g9622.t6.CDS4 4319255 4319499
chr_1 g9622 g9622.t6 TTS g9622.t6 4319666 4319666

Sequences

>g9622.t6 Gene=g9622 Length=1128
CAGTTTCATTCTGACAGTCTTTCTATAAACATCATTTGAAAATTTAATTTCTTCAGAAAC
AATTATCTGTTAAACTAATTAAAATATGATGAAACTCAAATCTAATTAAAAACTATAAGA
GGCTTCCGAGACTGACATAAATAATTTTAAGACAAATAGTTAATCTTTATAGTTCAGAGT
TTGGTGTTTAAAAAAATACCAAAAATGAATCCTGAATGGTCAAAAGTGGTCGTTATGCTA
ACCTTAGGATTAGGAAGCATGATCGTTGGAATGATTCCTTTAGCATTTACGCAATATAAT
TTAAGAAGAAATCCATTGCTATTTACATTTCTACTTTGCTTTGGTGCAGGAATTTTGATG
GCAACTTCATTAGTGCATATGTTACCTGAAGTTAGTGAAGATCTTGGTCATGGTCTCTCA
GAAATTATTTTTTGCATAGGATTTTTAATTGTATATTTGGCCGATGAATTACTTCATTTT
TGTATGGGTGAAGCTATACAACACAATCATTCTCATAATTTAAATATTGAAGAACAACAA
CCAATTATGCATCAACATTCACATCATCGTCGAAGTAAAACTCCATCATATGGATCAGTG
GAAGAGTATCAACATCAATCATGTGAAGAACATCAGCATCAACATGATATTGAAGATGAA
AGAATAAATGAAAGAATTTGTCATACAACTCATATTGAACCTTGCAATCAAACGCTAGCT
GGCGTTATTGGAATGCTGACTGCTCTCTCAGTACATTCTTTGATTGAAGGACTTGCTATA
GGTATTCAAGACTCGACATCTAAAGTAATGCTTCTTTTTGGTGCTGTTGTCTCACATAAA
TTCGTTGTTGGTTTTTGTTTAGGTGTAGAACTATCAGCTTCTGGCATTGGAATTGGAATG
GCGCTTGTCGATCTAAATTCAGTTGTTGACTCAAAATTCTTACCAATTATGCAAGGTATT
GCTGGTGGAACTCTTTTGTACGTTACTGTTTGTGAGGTTCTTCCTAGAGAAAAAGCACGT
TGGCATCAAAACCGAGTTAATAAAGCGGCAGGTTTAGCACAATTGCTGGCTTTCACATTA
GGATTTGCTGTAATGACACTTTTAAATATGTATGTAACTGAAAATTAA

>g9622.t6 Gene=g9622 Length=307
MNPEWSKVVVMLTLGLGSMIVGMIPLAFTQYNLRRNPLLFTFLLCFGAGILMATSLVHML
PEVSEDLGHGLSEIIFCIGFLIVYLADELLHFCMGEAIQHNHSHNLNIEEQQPIMHQHSH
HRRSKTPSYGSVEEYQHQSCEEHQHQHDIEDERINERICHTTHIEPCNQTLAGVIGMLTA
LSVHSLIEGLAIGIQDSTSKVMLLFGAVVSHKFVVGFCLGVELSASGIGIGMALVDLNSV
VDSKFLPIMQGIAGGTLLYVTVCEVLPREKARWHQNRVNKAAGLAQLLAFTLGFAVMTLL
NMYVTEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g9622.t6 PANTHER PTHR11040:SF169 FI24038P1 6 226 8.6E-86
5 g9622.t6 PANTHER PTHR11040 ZINC/IRON TRANSPORTER 6 226 8.6E-86
2 g9622.t6 PANTHER PTHR11040:SF169 FI24038P1 225 305 8.6E-86
4 g9622.t6 PANTHER PTHR11040 ZINC/IRON TRANSPORTER 225 305 8.6E-86
1 g9622.t6 Pfam PF02535 ZIP Zinc transporter 7 227 1.6E-38
19 g9622.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
24 g9622.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 26 -
14 g9622.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 27 37 -
21 g9622.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 38 61 -
18 g9622.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 62 66 -
23 g9622.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 67 86 -
13 g9622.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 87 212 -
25 g9622.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 213 235 -
16 g9622.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 236 246 -
20 g9622.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 247 266 -
15 g9622.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 267 286 -
22 g9622.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 287 304 -
17 g9622.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 305 307 -
7 g9622.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 9 28 -
8 g9622.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 38 60 -
9 g9622.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 67 86 -
12 g9622.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 170 192 -
11 g9622.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 213 235 -
10 g9622.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 245 262 -
6 g9622.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 283 305 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0046873 metal ion transmembrane transporter activity MF
GO:0030001 metal ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values