Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9622 g9622.t7 TSS g9622.t7 4318006 4318006
chr_1 g9622 g9622.t7 isoform g9622.t7 4318062 4319063
chr_1 g9622 g9622.t7 exon g9622.t7.exon1 4318062 4318119
chr_1 g9622 g9622.t7 exon g9622.t7.exon2 4318251 4318384
chr_1 g9622 g9622.t7 cds g9622.t7.CDS1 4318341 4318384
chr_1 g9622 g9622.t7 exon g9622.t7.exon3 4318441 4318582
chr_1 g9622 g9622.t7 cds g9622.t7.CDS2 4318441 4318582
chr_1 g9622 g9622.t7 exon g9622.t7.exon4 4318641 4319063
chr_1 g9622 g9622.t7 cds g9622.t7.CDS3 4318641 4319063
chr_1 g9622 g9622.t7 TTS g9622.t7 4319666 4319666

Sequences

>g9622.t7 Gene=g9622 Length=757
AAACAATTATCTGTTAAACTAATTAAAATATGATGAAACTCAAATCTAATTAAAAACTAT
AAGAGGCTTCCGAGACTGACATAAATAATTTTAAGACAAATAGTTAATCTTTATAGTTCA
GAGTTTGGTGTTTAAAAAAATACCAAAAATGAATCCTGAATGGTCAAAAGTGGTCGTTAT
GCTAACCTTAGGATTAGGAAGCATGATCGTTGGAATGATTCCTTTAGCATTTACGCAATA
TAATTTAAGAAGAAATCCATTGCTATTTACATTTCTACTTTGCTTTGGTGCAGGAATTTT
GATGGCAACTTCATTAGTGCATATGTTACCTGAAGTTAGTGAAGATCTTGGTCATGGTCT
CTCAGAAATTATTTTTTGCATAGGATTTTTAATTGTATATTTGGCCGATGAATTACTTCA
TTTTTGTATGGGTGAAGCTATACAACACAATCATTCTCATAATTTAAATATTGAAGAACA
ACAACCAATTATGCATCAACATTCACATCATCGTCGAAGTAAAACTCCATCATATGGATC
AGTGGAAGAGTATCAACATCAATCATGTGAAGAACATCAGCATCAACATGATATTGAAGA
TGAAAGAATAAATGAAAGAATTTGTCATACAACTCATATTGAACCTTGCAATCAAACGCT
AGCTGGCGTTATTGGAATGCTGACTGCTCTCTCAGTACATTCTTTGATTGAAGGACTTGC
TATAGGTATTCAAGACTCGACATCTAAAGTAATGCTT

>g9622.t7 Gene=g9622 Length=203
MNPEWSKVVVMLTLGLGSMIVGMIPLAFTQYNLRRNPLLFTFLLCFGAGILMATSLVHML
PEVSEDLGHGLSEIIFCIGFLIVYLADELLHFCMGEAIQHNHSHNLNIEEQQPIMHQHSH
HRRSKTPSYGSVEEYQHQSCEEHQHQHDIEDERINERICHTTHIEPCNQTLAGVIGMLTA
LSVHSLIEGLAIGIQDSTSKVML

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g9622.t7 PANTHER PTHR11040:SF169 FI24038P1 6 203 1.6E-47
3 g9622.t7 PANTHER PTHR11040 ZINC/IRON TRANSPORTER 6 203 1.6E-47
1 g9622.t7 Pfam PF02535 ZIP Zinc transporter 7 201 9.5E-32
10 g9622.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
13 g9622.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 26 -
8 g9622.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 27 37 -
11 g9622.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 38 61 -
9 g9622.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 62 66 -
12 g9622.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 67 86 -
7 g9622.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 87 203 -
4 g9622.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 29 -
5 g9622.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 38 60 -
6 g9622.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 70 92 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0046873 metal ion transmembrane transporter activity MF
GO:0030001 metal ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values