General information for g9636.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9636 is located on chr_1: 4379332..4381670 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9636 | g9636.t1 | TSS | g9636.t1 | 4379196 | 4379196 |
| chr_1 | g9636 | g9636.t1 | isoform | g9636.t1 | 4379332 | 4381670 |
| chr_1 | g9636 | g9636.t1 | exon | g9636.t1.exon1 | 4379332 | 4379389 |
| chr_1 | g9636 | g9636.t1 | cds | g9636.t1.CDS1 | 4379332 | 4379389 |
| chr_1 | g9636 | g9636.t1 | exon | g9636.t1.exon2 | 4379461 | 4379685 |
| chr_1 | g9636 | g9636.t1 | cds | g9636.t1.CDS2 | 4379461 | 4379685 |
| chr_1 | g9636 | g9636.t1 | exon | g9636.t1.exon3 | 4379746 | 4379834 |
| chr_1 | g9636 | g9636.t1 | cds | g9636.t1.CDS3 | 4379746 | 4379834 |
| chr_1 | g9636 | g9636.t1 | exon | g9636.t1.exon4 | 4379909 | 4380343 |
| chr_1 | g9636 | g9636.t1 | cds | g9636.t1.CDS4 | 4379909 | 4380343 |
| chr_1 | g9636 | g9636.t1 | exon | g9636.t1.exon5 | 4380414 | 4380734 |
| chr_1 | g9636 | g9636.t1 | cds | g9636.t1.CDS5 | 4380414 | 4380734 |
| chr_1 | g9636 | g9636.t1 | exon | g9636.t1.exon6 | 4380793 | 4380938 |
| chr_1 | g9636 | g9636.t1 | cds | g9636.t1.CDS6 | 4380793 | 4380938 |
| chr_1 | g9636 | g9636.t1 | exon | g9636.t1.exon7 | 4381005 | 4381122 |
| chr_1 | g9636 | g9636.t1 | cds | g9636.t1.CDS7 | 4381005 | 4381122 |
| chr_1 | g9636 | g9636.t1 | exon | g9636.t1.exon8 | 4381179 | 4381670 |
| chr_1 | g9636 | g9636.t1 | cds | g9636.t1.CDS8 | 4381179 | 4381670 |
| chr_1 | g9636 | g9636.t1 | TTS | g9636.t1 | NA | NA |
Sequences
>g9636.t1 Gene=g9636 Length=1884
ATGCGAGTGTTTTTGTGTTTAATTTTTAAAGTTTTGTGCATTATTTTTGCATTTAGAGAA
TCTAATGGTTTTTCAAGCAGATATATTAATGATTTCAATAAATCATCTATTGATCCCACA
TATGATTATGATTTGGCAAAATCTTTAATCGATGAGACACAATTATCAGATGATTTTAAA
AGTGAACAGGATGAAATATACCCTGACCCTGAAATATTTCATCGACGAATGTTTAATAAA
ACACGCTTTGGTGATAGGCATGATGAAAGCATAATTAAGATATATACAACACGCATACGA
CAACCGAGTACCAAAAAGGATAAACTTCAGCGAATAAATCAGACACAAGATTTGAATAAT
GACGATTTGAATAGTCACGATTTCATTGATTCGATAATGTTCATATATTACTATGGAAAA
AGCTCGCGCAATTGGAAAGATTTAGGCCGAAGAATTGTGATTATTGGCTCTTGCTTTGGA
ATAGGCGCACAAATTTTGACTTTAGTGGTTGTTACACTTCGCAATCGTAGAAGCAGAAAA
TCAAATGCCTTCTTTCCTATTACGATGAATTTGCTTGTAATGCTATTCTTAACAAATCTC
CTCTTCATTATTGGCGTCCATTCTAATAAAAATCCATTACGATGTGAAATGATTGCACTA
TTTTTGCATTACCTGTATTTAACAACGAGTGTATGGTGTTTCTTCTTCATTTTCATAATC
TACGATTTAATAATACATGAATACCTTCGACTTAAAATGAAATATATTTTAATAATTGCC
TATCTTGGACCTGTTTTATATGTCATGTTCTCATACGCAGCATCATCGACAAGCTTAGAA
TACCAAAAGTACTGTTTTATGTCGATTCATAAGAACATGATAATTAATTTCTTAATCCCT
ATATTCTTACTCATTGTTGCCACAACCATTCTCGGCACAATATGTCTTAAGAAAATTAAA
GATAAAAATCGTGATATATTGGATTCTACTAGTAATGCAATTGCATCTGGAATAATTATG
AATAATGGACAAAATATTGATAAATTTCTAACAGATAAAGAAATTCTAGCAAGTTATTAT
ATGAAAACTTCAACTTTTTCAAATCAACTAAAATGTTGCGATGATCATGGAAATCACGAT
GACAATTTTCTCAAATCAAAGACAGATTTGTATGACTCGAAGTTTGATTTGGGTCAACTT
TCTATAGATATATCTGAGTCATCTTCGACAACTAGCAACAGTTGTGACTATACAAATTTT
AAGAATGCTACAAAATTTTCACTGTTTTTTCAACCAGTATTTGCAATTTGCTGGTTCATT
GCTGTTGTTGCATTAGAAAATATTGAATCTTATGCATTTCCAACAGTATATGCCATTCTA
TATAACATTTTGAATTGGAGCATTTTATTGAAATCGAGAAACATATTGCCTTTCATGAAG
CATTTTTATGAAGTTGAGCATACAGAAAATACAGCAAATGAACATTGTAGTGAGGAAACT
GATGAAGATAACCACAATCAACTTGCAAGAAAGGACAGTAAAAATCAGAAGAACAATATT
TTAAATCAACTGTTTTTGAATTCAACGACTACTGAGTCATCACTTGTATTAGCAAGTACA
AATGGACTTCATCGCGATCAAATTCCATTATTATATCAAGCTCAATTTAATCATCGAAAA
TCGATTGCAAATTTGGAGCTAACTCAAGCAGATTTTCATTTTGAAAAACATAAGCAAAAT
AGTCGAAGTGAACATGACTTGTTATTTCAACAGCAACAACTTGGAAATTTGTTAACTAAT
GGAATTGAGAATGTCGTCATTCCTTGTGCAATAAGAACATCTTTGGATGCAAATTTAGAT
CGTGTGAGCACAATTAGTAATTGA
>g9636.t1 Gene=g9636 Length=627
MRVFLCLIFKVLCIIFAFRESNGFSSRYINDFNKSSIDPTYDYDLAKSLIDETQLSDDFK
SEQDEIYPDPEIFHRRMFNKTRFGDRHDESIIKIYTTRIRQPSTKKDKLQRINQTQDLNN
DDLNSHDFIDSIMFIYYYGKSSRNWKDLGRRIVIIGSCFGIGAQILTLVVVTLRNRRSRK
SNAFFPITMNLLVMLFLTNLLFIIGVHSNKNPLRCEMIALFLHYLYLTTSVWCFFFIFII
YDLIIHEYLRLKMKYILIIAYLGPVLYVMFSYAASSTSLEYQKYCFMSIHKNMIINFLIP
IFLLIVATTILGTICLKKIKDKNRDILDSTSNAIASGIIMNNGQNIDKFLTDKEILASYY
MKTSTFSNQLKCCDDHGNHDDNFLKSKTDLYDSKFDLGQLSIDISESSSTTSNSCDYTNF
KNATKFSLFFQPVFAICWFIAVVALENIESYAFPTVYAILYNILNWSILLKSRNILPFMK
HFYEVEHTENTANEHCSEETDEDNHNQLARKDSKNQKNNILNQLFLNSTTTESSLVLAST
NGLHRDQIPLLYQAQFNHRKSIANLELTQADFHFEKHKQNSRSEHDLLFQQQQLGNLLTN
GIENVVIPCAIRTSLDANLDRVSTISN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g9636.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 513 | - |
| 11 | g9636.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 512 | - |
| 2 | g9636.t1 | PANTHER | PTHR12011 | ADHESION G-PROTEIN COUPLED RECEPTOR | 155 | 454 | 2.3E-13 |
| 1 | g9636.t1 | Pfam | PF00002 | 7 transmembrane receptor (Secretin family) | 155 | 325 | 3.6E-11 |
| 22 | g9636.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
| 23 | g9636.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 24 | g9636.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 18 | - |
| 32 | g9636.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 19 | 23 | - |
| 21 | g9636.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 151 | - |
| 31 | g9636.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 152 | 171 | - |
| 16 | g9636.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 172 | 182 | - |
| 28 | g9636.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 183 | 204 | - |
| 20 | g9636.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 205 | 223 | - |
| 27 | g9636.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 224 | 243 | - |
| 14 | g9636.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 244 | 254 | - |
| 26 | g9636.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 274 | - |
| 18 | g9636.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 275 | 293 | - |
| 30 | g9636.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 294 | 316 | - |
| 17 | g9636.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 317 | 425 | - |
| 25 | g9636.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 426 | 445 | - |
| 19 | g9636.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 446 | 450 | - |
| 29 | g9636.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 451 | 470 | - |
| 15 | g9636.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 471 | 627 | - |
| 13 | g9636.t1 | ProSiteProfiles | PS50261 | G-protein coupled receptors family 2 profile 2. | 149 | 311 | 12.615 |
| 12 | g9636.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
| 9 | g9636.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 152 | 171 | - |
| 6 | g9636.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 184 | 206 | - |
| 5 | g9636.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 221 | 243 | - |
| 3 | g9636.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 274 | - |
| 8 | g9636.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 294 | 316 | - |
| 7 | g9636.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 426 | 448 | - |
| 4 | g9636.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 453 | 470 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0004888 | transmembrane signaling receptor activity | MF |
| GO:0007166 | cell surface receptor signaling pathway | BP |
| GO:0004930 | G protein-coupled receptor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
