General information for g9637.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glycerol kinase 3.
Parent gene
- The parent gene g9637 is located on chr_1: 4385920..4386382 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9637 | g9637.t1 | TTS | g9637.t1 | 4383754 | 4383754 |
| chr_1 | g9637 | g9637.t1 | isoform | g9637.t1 | 4384415 | 4386382 |
| chr_1 | g9637 | g9637.t1 | exon | g9637.t1.exon1 | 4384415 | 4384946 |
| chr_1 | g9637 | g9637.t1 | cds | g9637.t1.CDS1 | 4384415 | 4384946 |
| chr_1 | g9637 | g9637.t1 | exon | g9637.t1.exon2 | 4385134 | 4385917 |
| chr_1 | g9637 | g9637.t1 | cds | g9637.t1.CDS2 | 4385134 | 4385917 |
| chr_1 | g9637 | g9637.t1 | exon | g9637.t1.exon3 | 4386064 | 4386382 |
| chr_1 | g9637 | g9637.t1 | cds | g9637.t1.CDS3 | 4386064 | 4386382 |
| chr_1 | g9637 | g9637.t1 | TSS | g9637.t1 | 4386632 | 4386632 |
Sequences
>g9637.t1 Gene=g9637 Length=1635
ATGAATCAAACAAAGCTAATAGGTGTTATTGATGCAGGAACAAATACTGTTAAGTTTGTT
ATCTATAAAATTCCAAATTTTGATCAATTGTGCTCACATGAAATAGAAATAAAACAAATT
TCGCTGAAAGAGGGATATCTCGAACATGATCCTCTTGAAATCTTATCAGCAGTTCATCAA
TCAGCTAAAATTGCTATTGAATCACTTCAAAATTATGGATTTTCAAAAGACAACATTTCA
ACAATTGGCATCACAAATCAACGAGAAACGACTGTCATGTGGAATAAGAAAACAGGACGG
CCTCTATATAATGCAATAGTATGGAAAGACACGAGAACAGCGACATCAGTTGATGAAATA
ATGGAAAAATTATCTGTGGCCAAAGATCATTTTGTCGAAATATCTGGGCTTCCTATTTCT
TCTTTTTCATCTGCCTTAAAAATGCGATGGCTAAAGAAATTTGTGCCTTTAGTTAGAGAA
ACATGTCGTGAAGGATTGTGTCTTGCTGGAACTATAGATTCTTGGATTATATGGAATTTA
ATAAATGGCTTGCATATTACCGATTGCACAAATGCTTCACGAACACTTTTAATGAATATA
CAAACATTAAATTGGGATCCACAGCTTATGAATGCTTTCTCAATTGACGAAAAGATTTTA
CCAGAAATTAGAAGTTCATCAGAAGTATACGGAAAGATTAATGATGGCAGTATTCTTGAT
GGTCTAACAGTGAGTGCTGTGATAGGAAATCAACAAGCCTCATTAGTTGGACAATTGTGT
TTTAAAACTGGTCAAGCTAAAAGCACATATCGTTCCGGTTGTTTTTTATTGTGCAATGTA
GGTGACAAACCCGTTTTTTCACACCATGGCTTAGTTACAACCATCGGTTATAAATTTGGC
AAAAACAAGCCCATTTATGCTTTAGAAGGGAACATTGCTATCGCAGGGACAGCATTAAAG
TGGCTTAAAGATAACTTAAAACTCATGAATGACGCAGCTGATTCTGAAATTTTGGCAAAC
TCTGTACCAACAACTGGCGACTGTTATTTCGTACCCGCTTTTAGAGGATTATTTGCGCCG
TATTATCAAAAAGAAGCAAGAGGAGTCATTTGTGGCTTGACAGCATTCACTACTAAGAAT
CATATTATCAGAGCAGCATTAGAAACTGTTTGCTATCAAGTGACTGATGTAATTGAAGCC
ATGAAGAAAGATGCTGATATACATTTGAAAAAGCTACATGTTGATGGAAAAATGGCTAAT
AATAATTTATTAATGCAATTACAAGCAGACATAAGTGGAATTCCAATATTACGTTCATTA
TCTGAAGATACAACGAGTTTAGGTTGCGCCATAACTGCAGCATATGCAATTGATTTAGTT
GACTTGAGGCCTGAAAATCGCGTTTATTCAGTGAAAATTCATCATGATACCTATTTACCA
ACAACAACAATTGAAGATCGAAAAGCGAGAACAAATAAATGGAAAAAAGCCGTAGAACGA
TCATATGGATGGTCACAACCTCTAAAGAGCACCACAATGACAAATGAACAATATTCTATG
CTTTCGTCTATACCATTTACCCTTTATATAACAACATCTTTTCTTTTATTAGCTACATCA
GAAATATGCAAATAA
>g9637.t1 Gene=g9637 Length=544
MNQTKLIGVIDAGTNTVKFVIYKIPNFDQLCSHEIEIKQISLKEGYLEHDPLEILSAVHQ
SAKIAIESLQNYGFSKDNISTIGITNQRETTVMWNKKTGRPLYNAIVWKDTRTATSVDEI
MEKLSVAKDHFVEISGLPISSFSSALKMRWLKKFVPLVRETCREGLCLAGTIDSWIIWNL
INGLHITDCTNASRTLLMNIQTLNWDPQLMNAFSIDEKILPEIRSSSEVYGKINDGSILD
GLTVSAVIGNQQASLVGQLCFKTGQAKSTYRSGCFLLCNVGDKPVFSHHGLVTTIGYKFG
KNKPIYALEGNIAIAGTALKWLKDNLKLMNDAADSEILANSVPTTGDCYFVPAFRGLFAP
YYQKEARGVICGLTAFTTKNHIIRAALETVCYQVTDVIEAMKKDADIHLKKLHVDGKMAN
NNLLMQLQADISGIPILRSLSEDTTSLGCAITAAYAIDLVDLRPENRVYSVKIHHDTYLP
TTTIEDRKARTNKWKKAVERSYGWSQPLKSTTMTNEQYSMLSSIPFTLYITTSFLLLATS
EICK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9637.t1 | Gene3D | G3DSA:3.30.420.40 | - | 1 | 258 | 5.8E-85 |
| 7 | g9637.t1 | Gene3D | G3DSA:3.30.420.40 | - | 259 | 508 | 5.3E-76 |
| 3 | g9637.t1 | PANTHER | PTHR10196 | SUGAR KINASE | 2 | 520 | 1.0E-232 |
| 4 | g9637.t1 | PANTHER | PTHR10196:SF40 | FI03690P | 2 | 520 | 1.0E-232 |
| 12 | g9637.t1 | PIRSF | PIRSF000538 | GlpK | 4 | 510 | 1.7E-118 |
| 2 | g9637.t1 | Pfam | PF00370 | FGGY family of carbohydrate kinases, N-terminal domain | 7 | 257 | 9.1E-60 |
| 1 | g9637.t1 | Pfam | PF02782 | FGGY family of carbohydrate kinases, C-terminal domain | 267 | 456 | 5.2E-52 |
| 10 | g9637.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 517 | - |
| 11 | g9637.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 518 | 538 | - |
| 9 | g9637.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 539 | 544 | - |
| 13 | g9637.t1 | ProSitePatterns | PS00445 | FGGY family of carbohydrate kinases signature 2. | 368 | 388 | - |
| 5 | g9637.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 7 | 260 | 2.04E-65 |
| 6 | g9637.t1 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 260 | 504 | 3.24E-64 |
| 14 | g9637.t1 | TIGRFAM | TIGR01311 | glycerol_kin: glycerol kinase | 5 | 504 | 4.3E-190 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006072 | glycerol-3-phosphate metabolic process | BP |
| GO:0004370 | glycerol kinase activity | MF |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K00864 (glycerol kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
