General information for g9637.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9637 is located on chr_1: 4385920..4386382 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9637 | g9637.t3 | TTS | g9637.t3 | 4383754 | 4383754 |
| chr_1 | g9637 | g9637.t3 | isoform | g9637.t3 | 4384415 | 4384936 |
| chr_1 | g9637 | g9637.t3 | exon | g9637.t3.exon1 | 4384415 | 4384936 |
| chr_1 | g9637 | g9637.t3 | cds | g9637.t3.CDS1 | 4384415 | 4384849 |
| chr_1 | g9637 | g9637.t3 | TSS | g9637.t3 | NA | NA |
Sequences
>g9637.t3 Gene=g9637 Length=522
GGCTTGACAGCATTCACTACTAAGAATCATATTATCAGAGCAGCATTAGAAACTGTTTGC
TATCAAGTGACTGATGTAATTGAAGCCATGAAGAAAGATGCTGATATACATTTGAAAAAG
CTACATGTTGATGGAAAAATGGCTAATAATAATTTATTAATGCAATTACAAGCAGACATA
AGTGGAATTCCAATATTACGTTCATTATCTGAAGATACAACGAGTTTAGGTTGCGCCATA
ACTGCAGCATATGCAATTGATTTAGTTGACTTGAGGCCTGAAAATCGCGTTTATTCAGTG
AAAATTCATCATGATACCTATTTACCAACAACAACAATTGAAGATCGAAAAGCGAGAACA
AATAAATGGAAAAAAGCCGTAGAACGATCATATGGATGGTCACAACCTCTAAAGAGCACC
ACAATGACAAATGAACAATATTCTATGCTTTCGTCTATACCATTTACCCTTTATATAACA
ACATCTTTTCTTTTATTAGCTACATCAGAAATATGCAAATAA
>g9637.t3 Gene=g9637 Length=144
MKKDADIHLKKLHVDGKMANNNLLMQLQADISGIPILRSLSEDTTSLGCAITAAYAIDLV
DLRPENRVYSVKIHHDTYLPTTTIEDRKARTNKWKKAVERSYGWSQPLKSTTMTNEQYSM
LSSIPFTLYITTSFLLLATSEICK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9637.t3 | Gene3D | G3DSA:3.30.420.40 | - | 1 | 107 | 2.0E-23 |
| 2 | g9637.t3 | PANTHER | PTHR10196 | SUGAR KINASE | 1 | 122 | 1.2E-35 |
| 3 | g9637.t3 | PANTHER | PTHR10196:SF40 | FI03690P | 1 | 122 | 1.2E-35 |
| 1 | g9637.t3 | Pfam | PF02782 | FGGY family of carbohydrate kinases, C-terminal domain | 1 | 56 | 8.8E-14 |
| 7 | g9637.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 117 | - |
| 9 | g9637.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 118 | 138 | - |
| 8 | g9637.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 139 | 144 | - |
| 5 | g9637.t3 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 1 | 104 | 1.34E-18 |
| 4 | g9637.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 118 | 140 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
