General information for g9637.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable glycerol kinase.
Parent gene
- The parent gene g9637 is located on chr_1: 4385920..4386382 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9637 | g9637.t4 | isoform | g9637.t4 | 4385909 | 4386382 |
| chr_1 | g9637 | g9637.t4 | exon | g9637.t4.exon1 | 4385909 | 4385917 |
| chr_1 | g9637 | g9637.t4 | cds | g9637.t4.CDS1 | 4385910 | 4385917 |
| chr_1 | g9637 | g9637.t4 | exon | g9637.t4.exon2 | 4386064 | 4386382 |
| chr_1 | g9637 | g9637.t4 | cds | g9637.t4.CDS2 | 4386064 | 4386382 |
| chr_1 | g9637 | g9637.t4 | TSS | g9637.t4 | 4386632 | 4386632 |
| chr_1 | g9637 | g9637.t4 | TTS | g9637.t4 | NA | NA |
Sequences
>g9637.t4 Gene=g9637 Length=328
ATGAATCAAACAAAGCTAATAGGTGTTATTGATGCAGGAACAAATACTGTTAAGTTTGTT
ATCTATAAAATTCCAAATTTTGATCAATTGTGCTCACATGAAATAGAAATAAAACAAATT
TCGCTGAAAGAGGGATATCTCGAACATGATCCTCTTGAAATCTTATCAGCAGTTCATCAA
TCAGCTAAAATTGCTATTGAATCACTTCAAAATTATGGATTTTCAAAAGACAACATTTCA
ACAATTGGCATCACAAATCAACGAGAAACGACTGTCATGTGGAATAAGAAAACAGGACGG
CCTCTATATAATGCAATAGTATGGAAAG
>g9637.t4 Gene=g9637 Length=109
MNQTKLIGVIDAGTNTVKFVIYKIPNFDQLCSHEIEIKQISLKEGYLEHDPLEILSAVHQ
SAKIAIESLQNYGFSKDNISTIGITNQRETTVMWNKKTGRPLYNAIVWK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9637.t4 | Gene3D | G3DSA:3.30.420.40 | - | 1 | 109 | 0 |
| 2 | g9637.t4 | PANTHER | PTHR10196 | SUGAR KINASE | 2 | 109 | 0 |
| 3 | g9637.t4 | PANTHER | PTHR10196:SF40 | FI03690P | 2 | 109 | 0 |
| 1 | g9637.t4 | Pfam | PF00370 | FGGY family of carbohydrate kinases, N-terminal domain | 7 | 109 | 0 |
| 4 | g9637.t4 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 7 | 108 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed