General information for g9639.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9639 is located on chr_1: 4423701..4424405 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9639 | g9639.t3 | TTS | g9639.t3 | 4396190 | 4396190 |
| chr_1 | g9639 | g9639.t3 | isoform | g9639.t3 | 4396206 | 4397460 |
| chr_1 | g9639 | g9639.t3 | exon | g9639.t3.exon1 | 4396206 | 4396890 |
| chr_1 | g9639 | g9639.t3 | cds | g9639.t3.CDS1 | 4396545 | 4396890 |
| chr_1 | g9639 | g9639.t3 | exon | g9639.t3.exon2 | 4397000 | 4397460 |
| chr_1 | g9639 | g9639.t3 | cds | g9639.t3.CDS2 | 4397000 | 4397301 |
| chr_1 | g9639 | g9639.t3 | TSS | g9639.t3 | NA | NA |
Sequences
>g9639.t3 Gene=g9639 Length=1146
GAAGATGAAGCTGAAACTGAAGTTAGTGATACAAGCTCATCAAATAACAACAATAATAAT
CGAAAAACACCAACGACACCAAATTCTGCATCAGCACCGAAATCGAAAATTACATCGAAT
GGTTCTCCTTCATGTTCTAGCTCAATCTCACCCGTAACTATGTCACCACCAATTACAAAT
CATTCTTCAACAACGCCCACACAACAACGTTCATCTGAGGATCTAACAACTAATACCAAA
AAGGATTATAATTTGATGTCGAGTCCTTCTGCAACCAGAGGACCACCTTCAAATGGTCCA
GCCAATTATTTGAATCCACATGAGTCTAATACAACACTTGCACATCATCCTCATCCTGCT
CATCATTATCCATTGAATCCTATCAACCCATCGCCTGACACTGATCCAGAAGTGTTTAGG
TGGGTCAACTACAATCGCGATATTCCTGTTTCTTTTATACGAAATAATTCAATTGCATGT
TTACGTGCAAAGGCTCAAGAACATCAAGCAAGATTAATGAACAGTGGACTATTGGCACTT
CAAGTTAGATCTCTAGCTGGTCTTCAACAGCATCATCAATTACCAAGTCCAATGAGCAGC
TCACCAGATAGTGTTATGATCCACCAACATTCACCAAGTCCTTCGCCAATAAGATCGCCT
GAAAGTAACAACAATAATAATAGTAGCAGCAGGAATTTTAATTCAAGCATGACACATTCG
AGTGATGTTAGTGAAGATATAGATATCGAAGAGGTTAAGCCTTTTCACAACAAATCAAAT
GCAAGTCCAAATGTAGTTACATTTTGACACTAGAGTTGTGAATATATTGATGTAGATAGG
AATTCATCTTAACTCTAAGTAGAGAAAAAGAAAGGATTGCTACTAATTTTACTTACAACG
ATCATAAATGAAATCATGAATTACTAAATGATGGATTTTGTGCAATATGTAAAATAAAAA
TGATGATTATGATTAGAAACTAGTTGTTGTGCAACGAAGAAAAAGATTCGAAAAATATGT
AATTTGATAAATTCTATTTGAAAATGCTGTAAATAAATTTAAGATTACTTTAAAATTCAA
TAAAATGAAATGAAAGAGACATAGAATAAAGGATAAATATAAGAATAACTTTATAAAAGA
ATAAAA
>g9639.t3 Gene=g9639 Length=215
MSPPITNHSSTTPTQQRSSEDLTTNTKKDYNLMSSPSATRGPPSNGPANYLNPHESNTTL
AHHPHPAHHYPLNPINPSPDTDPEVFRWVNYNRDIPVSFIRNNSIACLRAKAQEHQARLM
NSGLLALQVRSLAGLQQHHQLPSPMSSSPDSVMIHQHSPSPSPIRSPESNNNNNSSSRNF
NSSMTHSSDVSEDIDIEEVKPFHNKSNASPNVVTF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9639.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - |
| 3 | g9639.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 215 | - |
| 4 | g9639.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 189 | - |
| 1 | g9639.t3 | Pfam | PF03826 | OAR motif | 101 | 116 | 7.3E-7 |
| 5 | g9639.t3 | ProSiteProfiles | PS50803 | OAR domain profile. | 103 | 116 | 10.509 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
